Coexpression cluster: Cluster_46 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 13.93% (17/122) 3.91 0.0 0.0
GO:0003677 DNA binding 11.48% (14/122) 3.4 0.0 0.0
GO:0006270 DNA replication initiation 4.1% (5/122) 6.98 0.0 0.0
GO:0090304 nucleic acid metabolic process 13.93% (17/122) 2.9 0.0 0.0
GO:0005634 nucleus 6.56% (8/122) 4.55 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 14.75% (18/122) 2.46 0.0 0.0
GO:0043226 organelle 9.02% (11/122) 3.51 0.0 0.0
GO:0005488 binding 33.61% (41/122) 1.36 0.0 0.0
GO:0043229 intracellular organelle 9.02% (11/122) 3.53 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 14.75% (18/122) 2.36 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 6.56% (8/122) 4.14 0.0 0.0
GO:0043227 membrane-bounded organelle 6.56% (8/122) 4.14 0.0 0.0
GO:0046483 heterocycle metabolic process 14.75% (18/122) 2.37 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 15.57% (19/122) 2.25 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 14.75% (18/122) 2.34 0.0 0.0
GO:0006260 DNA replication 4.92% (6/122) 4.92 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 14.75% (18/122) 2.18 0.0 1e-06
GO:0003676 nucleic acid binding 13.11% (16/122) 2.29 0.0 2e-06
GO:0097159 organic cyclic compound binding 20.49% (25/122) 1.66 0.0 3e-06
GO:1901363 heterocyclic compound binding 20.49% (25/122) 1.66 0.0 3e-06
GO:0043170 macromolecule metabolic process 15.57% (19/122) 1.71 5e-06 5.9e-05
GO:0009059 macromolecule biosynthetic process 6.56% (8/122) 3.02 7e-06 7.7e-05
GO:0036094 small molecule binding 13.93% (17/122) 1.75 1.1e-05 0.000125
GO:0044424 intracellular part 9.84% (12/122) 2.19 1.4e-05 0.000145
GO:0005524 ATP binding 11.48% (14/122) 1.92 2e-05 0.000192
GO:0003674 molecular_function 37.7% (46/122) 0.84 2e-05 0.000198
GO:0030554 adenyl nucleotide binding 11.48% (14/122) 1.91 2.2e-05 0.0002
GO:0032559 adenyl ribonucleotide binding 11.48% (14/122) 1.91 2.2e-05 0.000202
GO:0000166 nucleotide binding 13.11% (16/122) 1.73 2.6e-05 0.000208
GO:1901265 nucleoside phosphate binding 13.11% (16/122) 1.73 2.6e-05 0.000208
GO:0006269 DNA replication, synthesis of RNA primer 1.64% (2/122) 7.66 2.4e-05 0.000209
GO:0044237 cellular metabolic process 16.39% (20/122) 1.48 2.8e-05 0.000223
GO:0044464 cell part 9.84% (12/122) 2.07 3e-05 0.000225
GO:0008144 drug binding 11.48% (14/122) 1.85 3.4e-05 0.000253
GO:0006807 nitrogen compound metabolic process 16.39% (20/122) 1.46 3.6e-05 0.000257
GO:0016779 nucleotidyltransferase activity 4.1% (5/122) 3.72 4e-05 0.000273
GO:0097367 carbohydrate derivative binding 12.3% (15/122) 1.75 4e-05 0.000278
GO:0003896 DNA primase activity 1.64% (2/122) 7.08 7.2e-05 0.000478
GO:0043168 anion binding 12.3% (15/122) 1.64 9.7e-05 0.000622
GO:0009987 cellular process 18.85% (23/122) 1.23 0.000101 0.000633
GO:0035639 purine ribonucleoside triphosphate binding 11.48% (14/122) 1.7 0.000109 0.000667
GO:0044238 primary metabolic process 16.39% (20/122) 1.34 0.000113 0.000676
GO:0032555 purine ribonucleotide binding 11.48% (14/122) 1.69 0.000117 0.000683
GO:0017076 purine nucleotide binding 11.48% (14/122) 1.68 0.000124 0.000709
GO:0032553 ribonucleotide binding 11.48% (14/122) 1.66 0.000146 0.000781
GO:0051052 regulation of DNA metabolic process 1.64% (2/122) 6.66 0.000144 0.000787
GO:0006275 regulation of DNA replication 1.64% (2/122) 6.66 0.000144 0.000787
GO:0071704 organic substance metabolic process 16.39% (20/122) 1.28 0.000197 0.001031
GO:0034645 cellular macromolecule biosynthetic process 4.92% (6/122) 2.83 0.00021 0.001054
GO:0140097 catalytic activity, acting on DNA 3.28% (4/122) 3.78 0.000209 0.00107
GO:0003887 DNA-directed DNA polymerase activity 2.46% (3/122) 4.49 0.000315 0.001552
GO:0034061 DNA polymerase activity 2.46% (3/122) 4.44 0.000352 0.001698
GO:0043167 ion binding 13.93% (17/122) 1.33 0.000395 0.001869
GO:0005515 protein binding 13.11% (16/122) 1.29 0.000798 0.003708
GO:0044249 cellular biosynthetic process 7.38% (9/122) 1.87 0.000859 0.003919
GO:1901576 organic substance biosynthetic process 7.38% (9/122) 1.83 0.001014 0.004544
GO:0006281 DNA repair 3.28% (4/122) 3.12 0.001178 0.005188
GO:0033554 cellular response to stress 3.28% (4/122) 3.06 0.001377 0.005761
GO:0051716 cellular response to stimulus 3.28% (4/122) 3.06 0.001377 0.005761
GO:0006974 cellular response to DNA damage stimulus 3.28% (4/122) 3.06 0.001377 0.005761
GO:0009058 biosynthetic process 7.38% (9/122) 1.72 0.001723 0.007091
GO:0006950 response to stress 3.28% (4/122) 2.93 0.001909 0.007726
GO:0005694 chromosome 1.64% (2/122) 4.75 0.002436 0.009704
GO:0008152 metabolic process 16.39% (20/122) 0.96 0.002882 0.011301
GO:0050896 response to stimulus 3.28% (4/122) 2.75 0.002994 0.01156
GO:0000776 kinetochore 0.82% (1/122) 7.66 0.004939 0.012274
GO:0031262 Ndc80 complex 0.82% (1/122) 7.66 0.004939 0.012274
GO:0061731 ribonucleoside-diphosphate reductase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0051097 negative regulation of helicase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0051095 regulation of helicase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0034629 cellular protein-containing complex localization 0.82% (1/122) 7.66 0.004939 0.012274
GO:0031144 proteasome localization 0.82% (1/122) 7.66 0.004939 0.012274
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.82% (1/122) 7.66 0.004939 0.012274
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 0.82% (1/122) 7.66 0.004939 0.012274
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.82% (1/122) 7.66 0.004939 0.012274
GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system 0.82% (1/122) 7.66 0.004939 0.012274
GO:0050797 thymidylate synthase (FAD) activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0042555 MCM complex 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009263 deoxyribonucleotide biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009265 2'-deoxyribonucleotide biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0019692 deoxyribose phosphate metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0006231 dTMP biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0046073 dTMP metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009394 2'-deoxyribonucleotide metabolic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0046385 deoxyribose phosphate biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 0.82% (1/122) 7.66 0.004939 0.012274
GO:1905463 negative regulation of DNA duplex unwinding 0.82% (1/122) 7.66 0.004939 0.012274
GO:1905774 regulation of DNA helicase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:1905775 negative regulation of DNA helicase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0019206 nucleoside kinase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:1905462 regulation of DNA duplex unwinding 0.82% (1/122) 7.66 0.004939 0.012274
GO:0019136 deoxynucleoside kinase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0004797 thymidine kinase activity 0.82% (1/122) 7.66 0.004939 0.012274
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.64% (2/122) 3.91 0.007833 0.019276
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 0.82% (1/122) 6.66 0.009854 0.022484
GO:0009262 deoxyribonucleotide metabolic process 0.82% (1/122) 6.66 0.009854 0.022484
GO:0010498 proteasomal protein catabolic process 0.82% (1/122) 6.66 0.009854 0.022484
GO:0031503 protein-containing complex localization 0.82% (1/122) 6.66 0.009854 0.022484
GO:0006333 chromatin assembly or disassembly 0.82% (1/122) 6.66 0.009854 0.022484
GO:2001251 negative regulation of chromosome organization 0.82% (1/122) 6.66 0.009854 0.022484
GO:0034062 5'-3' RNA polymerase activity 1.64% (2/122) 3.75 0.009615 0.023205
GO:0097747 RNA polymerase activity 1.64% (2/122) 3.75 0.009615 0.023205
GO:0005575 cellular_component 9.84% (12/122) 1.09 0.010813 0.024451
GO:0016772 transferase activity, transferring phosphorus-containing groups 5.74% (7/122) 1.5 0.012188 0.027313
GO:0008150 biological_process 20.49% (25/122) 0.66 0.013441 0.029855
GO:0006220 pyrimidine nucleotide metabolic process 0.82% (1/122) 6.08 0.014744 0.030088
GO:0043086 negative regulation of catalytic activity 0.82% (1/122) 6.08 0.014744 0.030088
GO:0006221 pyrimidine nucleotide biosynthetic process 0.82% (1/122) 6.08 0.014744 0.030088
GO:0044092 negative regulation of molecular function 0.82% (1/122) 6.08 0.014744 0.030088
GO:0051346 negative regulation of hydrolase activity 0.82% (1/122) 6.08 0.014744 0.030088
GO:0019205 nucleobase-containing compound kinase activity 0.82% (1/122) 6.08 0.014744 0.030088
GO:0005815 microtubule organizing center 0.82% (1/122) 6.08 0.014744 0.030088
GO:0043232 intracellular non-membrane-bounded organelle 2.46% (3/122) 2.59 0.013789 0.030096
GO:0043228 non-membrane-bounded organelle 2.46% (3/122) 2.59 0.013789 0.030096
GO:0006310 DNA recombination 1.64% (2/122) 3.45 0.014394 0.031145
GO:0030163 protein catabolic process 0.82% (1/122) 5.66 0.019611 0.038455
GO:0051336 regulation of hydrolase activity 0.82% (1/122) 5.66 0.019611 0.038455
GO:0043015 gamma-tubulin binding 0.82% (1/122) 5.66 0.019611 0.038455
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 0.82% (1/122) 5.66 0.019611 0.038455
GO:0033044 regulation of chromosome organization 0.82% (1/122) 5.66 0.019611 0.038455
GO:0003910 DNA ligase (ATP) activity 0.82% (1/122) 5.34 0.024454 0.046854
GO:0051129 negative regulation of cellular component organization 0.82% (1/122) 5.34 0.024454 0.046854
GO:0010639 negative regulation of organelle organization 0.82% (1/122) 5.34 0.024454 0.046854
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_49 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_110 0.067 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_172 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_60 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_158 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_23 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_69 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_76 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_90 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_107 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_112 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_174 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_193 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_206 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_22 0.108 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_188 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_1 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_115 0.053 Archaeplastida Compare
Zea mays HCCA Cluster_175 0.051 Archaeplastida Compare
Zea mays HCCA Cluster_277 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_309 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.066 Archaeplastida Compare
Zea mays HCCA Cluster_358 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_3 0.062 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_69 0.063 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_84 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_116 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.056 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_154 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_184 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_222 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_235 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_76 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_169 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_194 0.092 Archaeplastida Compare
Picea abies HCCA Cluster_376 0.046 Archaeplastida Compare
Picea abies HCCA Cluster_379 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_87 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_173 0.06 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_269 0.033 Archaeplastida Compare
Oryza sativa HCCA Cluster_340 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_29 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_22 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_77 0.07 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_139 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_53 0.07 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.033 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_39 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_63 0.079 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_88 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_110 0.078 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_112 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_151 0.022 Archaeplastida Compare
Sequences (122) (download table)

InterPro Domains

GO Terms

Family Terms