Coexpression cluster: Cluster_89 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 14.0% (14/100) 3.61 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 11.0% (11/100) 3.69 0.0 0.0
GO:0009059 macromolecule biosynthetic process 11.0% (11/100) 3.52 0.0 0.0
GO:0044249 cellular biosynthetic process 14.0% (14/100) 2.89 0.0 0.0
GO:1901576 organic substance biosynthetic process 14.0% (14/100) 2.82 0.0 0.0
GO:0009058 biosynthetic process 14.0% (14/100) 2.68 0.0 1e-06
GO:1901566 organonitrogen compound biosynthetic process 10.0% (10/100) 3.3 0.0 2e-06
GO:0005840 ribosome 7.0% (7/100) 3.97 0.0 6e-06
GO:0034641 cellular nitrogen compound metabolic process 14.0% (14/100) 2.43 0.0 7e-06
GO:0043043 peptide biosynthetic process 7.0% (7/100) 3.9 1e-06 7e-06
GO:0003735 structural constituent of ribosome 7.0% (7/100) 3.9 1e-06 7e-06
GO:0006412 translation 7.0% (7/100) 3.92 0.0 7e-06
GO:0006518 peptide metabolic process 7.0% (7/100) 3.85 1e-06 8e-06
GO:0043232 intracellular non-membrane-bounded organelle 7.0% (7/100) 3.79 1e-06 8e-06
GO:0043228 non-membrane-bounded organelle 7.0% (7/100) 3.79 1e-06 8e-06
GO:0005198 structural molecule activity 7.0% (7/100) 3.78 1e-06 8e-06
GO:0043604 amide biosynthetic process 7.0% (7/100) 3.82 1e-06 8e-06
GO:0043603 cellular amide metabolic process 7.0% (7/100) 3.76 1e-06 8e-06
GO:1990904 ribonucleoprotein complex 7.0% (7/100) 3.75 1e-06 8e-06
GO:0034654 nucleobase-containing compound biosynthetic process 7.0% (7/100) 3.67 1e-06 1.1e-05
GO:0018130 heterocycle biosynthetic process 7.0% (7/100) 3.38 5e-06 4e-05
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.0% (4/100) 5.05 7e-06 4.8e-05
GO:0019438 aromatic compound biosynthetic process 7.0% (7/100) 3.33 7e-06 4.9e-05
GO:1901362 organic cyclic compound biosynthetic process 7.0% (7/100) 3.18 1.3e-05 8.7e-05
GO:0034062 5'-3' RNA polymerase activity 4.0% (4/100) 4.6 2.3e-05 0.000144
GO:0097747 RNA polymerase activity 4.0% (4/100) 4.6 2.3e-05 0.000144
GO:0044444 cytoplasmic part 7.0% (7/100) 2.98 3.2e-05 0.000189
GO:0097659 nucleic acid-templated transcription 4.0% (4/100) 4.46 3.4e-05 0.00019
GO:0006351 transcription, DNA-templated 4.0% (4/100) 4.46 3.4e-05 0.00019
GO:0043226 organelle 7.0% (7/100) 2.82 6.5e-05 0.000317
GO:0015986 ATP synthesis coupled proton transport 3.0% (3/100) 5.28 6.5e-05 0.000324
GO:0015985 energy coupled proton transport, down electrochemical gradient 3.0% (3/100) 5.28 6.5e-05 0.000324
GO:0043229 intracellular organelle 7.0% (7/100) 2.82 6.4e-05 0.000343
GO:0016779 nucleotidyltransferase activity 4.0% (4/100) 3.83 0.000188 0.000885
GO:0032774 RNA biosynthetic process 4.0% (4/100) 3.8 0.000207 0.000948
GO:1902600 proton transmembrane transport 3.0% (3/100) 4.49 0.00033 0.001465
GO:0032991 protein-containing complex 7.0% (7/100) 2.23 0.000774 0.003349
GO:0006754 ATP biosynthetic process 3.0% (3/100) 3.99 0.000918 0.003497
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 3.0% (3/100) 3.99 0.000918 0.003497
GO:0009145 purine nucleoside triphosphate biosynthetic process 3.0% (3/100) 3.99 0.000918 0.003497
GO:0009142 nucleoside triphosphate biosynthetic process 3.0% (3/100) 3.99 0.000918 0.003497
GO:0009201 ribonucleoside triphosphate biosynthetic process 3.0% (3/100) 3.99 0.000918 0.003497
GO:0009127 purine nucleoside monophosphate biosynthetic process 3.0% (3/100) 3.92 0.001061 0.003691
GO:0009124 nucleoside monophosphate biosynthetic process 3.0% (3/100) 3.92 0.001061 0.003691
GO:0009156 ribonucleoside monophosphate biosynthetic process 3.0% (3/100) 3.92 0.001061 0.003691
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 3.0% (3/100) 3.92 0.001061 0.003691
GO:0009141 nucleoside triphosphate metabolic process 3.0% (3/100) 3.74 0.001525 0.003813
GO:0098660 inorganic ion transmembrane transport 3.0% (3/100) 3.74 0.001525 0.003813
GO:0098655 cation transmembrane transport 3.0% (3/100) 3.74 0.001525 0.003813
GO:0098662 inorganic cation transmembrane transport 3.0% (3/100) 3.74 0.001525 0.003813
GO:0009144 purine nucleoside triphosphate metabolic process 3.0% (3/100) 3.8 0.001344 0.00384
GO:0009199 ribonucleoside triphosphate metabolic process 3.0% (3/100) 3.8 0.001344 0.00384
GO:0009205 purine ribonucleoside triphosphate metabolic process 3.0% (3/100) 3.8 0.001344 0.00384
GO:0046390 ribose phosphate biosynthetic process 3.0% (3/100) 3.87 0.001177 0.003844
GO:0009152 purine ribonucleotide biosynthetic process 3.0% (3/100) 3.87 0.001177 0.003844
GO:0009260 ribonucleotide biosynthetic process 3.0% (3/100) 3.87 0.001177 0.003844
GO:0006164 purine nucleotide biosynthetic process 3.0% (3/100) 3.85 0.001218 0.003896
GO:0072522 purine-containing compound biosynthetic process 3.0% (3/100) 3.82 0.001301 0.003928
GO:0015672 monovalent inorganic cation transport 3.0% (3/100) 3.82 0.001301 0.003928
GO:0046034 ATP metabolic process 3.0% (3/100) 3.82 0.001301 0.003928
GO:0009161 ribonucleoside monophosphate metabolic process 3.0% (3/100) 3.75 0.001479 0.003943
GO:0009123 nucleoside monophosphate metabolic process 3.0% (3/100) 3.75 0.001479 0.003943
GO:0009126 purine nucleoside monophosphate metabolic process 3.0% (3/100) 3.75 0.001479 0.003943
GO:0009167 purine ribonucleoside monophosphate metabolic process 3.0% (3/100) 3.75 0.001479 0.003943
GO:0034220 ion transmembrane transport 3.0% (3/100) 3.65 0.001824 0.004491
GO:0009165 nucleotide biosynthetic process 3.0% (3/100) 3.62 0.001932 0.004613
GO:1901293 nucleoside phosphate biosynthetic process 3.0% (3/100) 3.62 0.001932 0.004613
GO:1901137 carbohydrate derivative biosynthetic process 3.0% (3/100) 3.52 0.002338 0.0055
GO:0044237 cellular metabolic process 16.0% (16/100) 1.13 0.002457 0.005698
GO:0006807 nitrogen compound metabolic process 15.0% (15/100) 1.17 0.002628 0.006008
GO:0006139 nucleobase-containing compound metabolic process 7.0% (7/100) 1.84 0.003552 0.007786
GO:0006163 purine nucleotide metabolic process 3.0% (3/100) 3.3 0.003612 0.007809
GO:0009259 ribonucleotide metabolic process 3.0% (3/100) 3.31 0.003532 0.007849
GO:0009150 purine ribonucleotide metabolic process 3.0% (3/100) 3.31 0.003532 0.007849
GO:0072521 purine-containing compound metabolic process 3.0% (3/100) 3.28 0.003775 0.008053
GO:0019693 ribose phosphate metabolic process 3.0% (3/100) 3.25 0.003942 0.008299
GO:0140098 catalytic activity, acting on RNA 4.0% (4/100) 2.62 0.004228 0.008785
GO:0090407 organophosphate biosynthetic process 3.0% (3/100) 3.21 0.00429 0.008801
GO:0044260 cellular macromolecule metabolic process 12.0% (12/100) 1.25 0.004432 0.008976
GO:0046483 heterocycle metabolic process 7.0% (7/100) 1.73 0.005358 0.010716
GO:0009117 nucleotide metabolic process 3.0% (3/100) 3.09 0.005445 0.010756
GO:0006725 cellular aromatic compound metabolic process 7.0% (7/100) 1.7 0.005937 0.011444
GO:0006753 nucleoside phosphate metabolic process 3.0% (3/100) 3.05 0.005867 0.011448
GO:0044424 intracellular part 7.0% (7/100) 1.7 0.006043 0.011511
GO:1901360 organic cyclic compound metabolic process 7.0% (7/100) 1.67 0.006754 0.012713
GO:0016070 RNA metabolic process 4.0% (4/100) 2.4 0.007253 0.013494
GO:0055086 nucleobase-containing small molecule metabolic process 3.0% (3/100) 2.87 0.008138 0.014966
GO:0044464 cell part 7.0% (7/100) 1.6 0.00873 0.015872
GO:0017144 drug metabolic process 3.0% (3/100) 2.82 0.008948 0.016086
GO:0019637 organophosphate metabolic process 3.0% (3/100) 2.62 0.012991 0.023094
GO:1901135 carbohydrate derivative metabolic process 3.0% (3/100) 2.59 0.013869 0.024385
GO:0009987 cellular process 16.0% (16/100) 0.86 0.01443 0.025096
GO:1901564 organonitrogen compound metabolic process 11.0% (11/100) 1.08 0.014828 0.02551
GO:0006812 cation transport 3.0% (3/100) 2.51 0.015919 0.027096
GO:0044238 primary metabolic process 15.0% (15/100) 0.85 0.01814 0.030552
GO:0043170 macromolecule metabolic process 12.0% (12/100) 0.98 0.01854 0.0309
GO:0071704 organic substance metabolic process 15.0% (15/100) 0.79 0.025833 0.042612
GO:0044267 cellular protein metabolic process 8.0% (8/100) 1.14 0.029475 0.048122
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_61 0.079 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_107 0.066 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_92 0.053 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_93 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_151 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_199 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_30 0.122 Archaeplastida Compare
Gingko biloba HCCA Cluster_51 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_78 0.143 Archaeplastida Compare
Gingko biloba HCCA Cluster_236 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_297 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_44 0.053 Archaeplastida Compare
Zea mays HCCA Cluster_45 0.048 Archaeplastida Compare
Zea mays HCCA Cluster_160 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_246 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_255 0.033 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_8 0.05 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_140 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_154 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_54 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_4 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_125 0.083 Archaeplastida Compare
Oryza sativa HCCA Cluster_182 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_238 0.028 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_27 0.06 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_1 0.079 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_3 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_5 0.067 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_16 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_34 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_83 0.053 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_113 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_117 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_149 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_25 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_99 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_165 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.036 Archaeplastida Compare
Sequences (100) (download table)

InterPro Domains

GO Terms

Family Terms