Coexpression cluster: Cluster_24 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 14.5% (19/131) 4.86 0.0 0.0
GO:0043039 tRNA aminoacylation 10.69% (14/131) 5.81 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 10.69% (14/131) 5.81 0.0 0.0
GO:0043038 amino acid activation 10.69% (14/131) 5.81 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 10.69% (14/131) 5.81 0.0 0.0
GO:0016874 ligase activity 12.98% (17/131) 4.92 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 9.92% (13/131) 5.82 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 10.69% (14/131) 5.16 0.0 0.0
GO:0019752 carboxylic acid metabolic process 14.5% (19/131) 4.14 0.0 0.0
GO:0043436 oxoacid metabolic process 14.5% (19/131) 4.14 0.0 0.0
GO:0006082 organic acid metabolic process 14.5% (19/131) 4.13 0.0 0.0
GO:0044281 small molecule metabolic process 16.79% (22/131) 3.63 0.0 0.0
GO:0006399 tRNA metabolic process 10.69% (14/131) 4.95 0.0 0.0
GO:0034660 ncRNA metabolic process 11.45% (15/131) 4.58 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 12.21% (16/131) 4.25 0.0 0.0
GO:0046483 heterocycle metabolic process 19.85% (26/131) 2.88 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 19.85% (26/131) 2.87 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 19.85% (26/131) 2.83 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 18.32% (24/131) 2.92 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 21.37% (28/131) 2.58 0.0 0.0
GO:0090304 nucleic acid metabolic process 16.03% (21/131) 3.03 0.0 0.0
GO:0016070 RNA metabolic process 13.74% (18/131) 3.28 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 21.37% (28/131) 2.27 0.0 0.0
GO:0005524 ATP binding 19.85% (26/131) 2.38 0.0 0.0
GO:0000166 nucleotide binding 22.9% (30/131) 2.14 0.0 0.0
GO:1901265 nucleoside phosphate binding 22.9% (30/131) 2.14 0.0 0.0
GO:0006807 nitrogen compound metabolic process 27.48% (36/131) 1.87 0.0 0.0
GO:0032555 purine ribonucleotide binding 21.37% (28/131) 2.2 0.0 0.0
GO:0017076 purine nucleotide binding 21.37% (28/131) 2.19 0.0 0.0
GO:0032553 ribonucleotide binding 21.37% (28/131) 2.19 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 19.85% (26/131) 2.3 0.0 0.0
GO:0030554 adenyl nucleotide binding 19.85% (26/131) 2.3 0.0 0.0
GO:0036094 small molecule binding 22.9% (30/131) 2.07 0.0 0.0
GO:0097367 carbohydrate derivative binding 21.37% (28/131) 2.16 0.0 0.0
GO:0008144 drug binding 19.85% (26/131) 2.27 0.0 0.0
GO:1901363 heterocyclic compound binding 31.3% (41/131) 1.61 0.0 0.0
GO:0097159 organic cyclic compound binding 31.3% (41/131) 1.61 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 22.14% (29/131) 1.98 0.0 0.0
GO:0043168 anion binding 21.37% (28/131) 2.02 0.0 0.0
GO:0044238 primary metabolic process 28.24% (37/131) 1.61 0.0 0.0
GO:0071704 organic substance metabolic process 28.24% (37/131) 1.53 0.0 0.0
GO:0044237 cellular metabolic process 25.19% (33/131) 1.63 0.0 0.0
GO:0003674 molecular_function 55.73% (73/131) 0.79 0.0 0.0
GO:0043167 ion binding 24.43% (32/131) 1.55 0.0 0.0
GO:0043170 macromolecule metabolic process 21.37% (28/131) 1.67 0.0 0.0
GO:0008152 metabolic process 32.82% (43/131) 1.18 0.0 1e-06
GO:0003676 nucleic acid binding 15.27% (20/131) 2.02 0.0 1e-06
GO:0009987 cellular process 25.19% (33/131) 1.39 0.0 2e-06
GO:0005488 binding 36.64% (48/131) 0.99 1e-06 6e-06
GO:0003824 catalytic activity 35.11% (46/131) 1.01 1e-06 7e-06
GO:0003723 RNA binding 6.87% (9/131) 2.8 6e-06 4.7e-05
GO:0032040 small-subunit processome 2.29% (3/131) 6.21 6e-06 4.8e-05
GO:0008150 biological_process 37.4% (49/131) 0.87 6e-06 4.8e-05
GO:0009058 biosynthetic process 11.45% (15/131) 1.98 6e-06 4.9e-05
GO:0030684 preribosome 2.29% (3/131) 5.8 1.6e-05 0.000125
GO:0019238 cyclohydrolase activity 1.53% (2/131) 7.21 4.5e-05 0.000338
GO:0044249 cellular biosynthetic process 9.16% (12/131) 1.88 0.000107 0.000784
GO:0008652 cellular amino acid biosynthetic process 3.05% (4/131) 3.93 0.000135 0.000978
GO:1901566 organonitrogen compound biosynthetic process 6.87% (9/131) 2.19 0.000166 0.001176
GO:1901576 organic substance biosynthetic process 9.16% (12/131) 1.8 0.000177 0.001235
GO:0000152 nuclear ubiquitin ligase complex 1.53% (2/131) 6.21 0.000269 0.001815
GO:0005680 anaphase-promoting complex 1.53% (2/131) 6.21 0.000269 0.001815
GO:0031461 cullin-RING ubiquitin ligase complex 1.53% (2/131) 5.89 0.000446 0.002917
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.53% (2/131) 5.89 0.000446 0.002917
GO:0044464 cell part 10.69% (14/131) 1.47 0.000539 0.003477
GO:0044283 small molecule biosynthetic process 3.82% (5/131) 2.86 0.000638 0.004053
GO:0000151 ubiquitin ligase complex 1.53% (2/131) 5.63 0.000665 0.004161
GO:0044424 intracellular part 9.92% (13/131) 1.49 0.000735 0.004528
GO:0000105 histidine biosynthetic process 1.53% (2/131) 5.4 0.000927 0.005473
GO:0052803 imidazole-containing compound metabolic process 1.53% (2/131) 5.4 0.000927 0.005473
GO:0006547 histidine metabolic process 1.53% (2/131) 5.4 0.000927 0.005473
GO:0004252 serine-type endopeptidase activity 2.29% (3/131) 3.94 0.000964 0.00561
GO:0016741 transferase activity, transferring one-carbon groups 4.58% (6/131) 2.35 0.001177 0.006758
GO:0000049 tRNA binding 1.53% (2/131) 5.21 0.001231 0.006971
GO:0005575 cellular_component 16.03% (21/131) 1.02 0.001374 0.007674
GO:0019438 aromatic compound biosynthetic process 4.58% (6/131) 2.3 0.001441 0.00774
GO:1990904 ribonucleoprotein complex 4.58% (6/131) 2.3 0.001441 0.00774
GO:1901607 alpha-amino acid biosynthetic process 2.29% (3/131) 3.75 0.001411 0.007781
GO:0003684 damaged DNA binding 1.53% (2/131) 5.04 0.001576 0.008358
GO:0018130 heterocycle biosynthetic process 4.58% (6/131) 2.26 0.001655 0.008667
GO:0046394 carboxylic acid biosynthetic process 3.05% (4/131) 2.95 0.001829 0.009346
GO:0016053 organic acid biosynthetic process 3.05% (4/131) 2.95 0.001829 0.009346
GO:0032991 protein-containing complex 7.63% (10/131) 1.56 0.00216 0.010906
GO:1901362 organic cyclic compound biosynthetic process 4.58% (6/131) 2.15 0.002384 0.01189
GO:1902494 catalytic complex 3.05% (4/131) 2.77 0.002857 0.014083
GO:1901605 alpha-amino acid metabolic process 2.29% (3/131) 3.34 0.003246 0.015815
GO:0004175 endopeptidase activity 3.05% (4/131) 2.69 0.003495 0.01664
GO:0072522 purine-containing compound biosynthetic process 2.29% (3/131) 3.31 0.003461 0.016668
GO:0005634 nucleus 3.05% (4/131) 2.66 0.003775 0.017773
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.53% (2/131) 4.4 0.003896 0.01814
GO:0009073 aromatic amino acid family biosynthetic process 1.53% (2/131) 4.31 0.004476 0.020386
GO:0008173 RNA methyltransferase activity 1.53% (2/131) 4.31 0.004476 0.020386
GO:0005737 cytoplasm 2.29% (3/131) 3.1 0.005209 0.023467
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0006177 GMP biosynthetic process 0.76% (1/131) 7.21 0.006745 0.02375
GO:0008297 single-stranded DNA exodeoxyribonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0003937 IMP cyclohydrolase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004536 deoxyribonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004529 exodeoxyribonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004826 phenylalanine-tRNA ligase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004176 ATP-dependent peptidase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004358 glutamate N-acetyltransferase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0008409 5'-3' exonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0006144 purine nucleobase metabolic process 0.76% (1/131) 7.21 0.006745 0.02375
GO:0046037 GMP metabolic process 0.76% (1/131) 7.21 0.006745 0.02375
GO:0006432 phenylalanyl-tRNA aminoacylation 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0004637 phosphoribosylamine-glycine ligase activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0035312 5'-3' exodeoxyribonuclease activity 0.76% (1/131) 7.21 0.006745 0.02375
GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters 0.76% (1/131) 7.21 0.006745 0.02375
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.76% (1/131) 7.21 0.006745 0.02375
GO:1901070 guanosine-containing compound biosynthetic process 0.76% (1/131) 7.21 0.006745 0.02375
GO:0009113 purine nucleobase biosynthetic process 0.76% (1/131) 7.21 0.006745 0.02375
GO:0008168 methyltransferase activity 3.82% (5/131) 2.16 0.005385 0.024005
GO:0016787 hydrolase activity 10.69% (14/131) 1.07 0.006929 0.024194
GO:0017171 serine hydrolase activity 2.29% (3/131) 3.04 0.005789 0.025268
GO:0008236 serine-type peptidase activity 2.29% (3/131) 3.04 0.005789 0.025268
GO:0072521 purine-containing compound metabolic process 2.29% (3/131) 2.96 0.00673 0.029071
GO:0009072 aromatic amino acid family metabolic process 1.53% (2/131) 3.82 0.008719 0.030192
GO:0043227 membrane-bounded organelle 3.05% (4/131) 2.29 0.009153 0.031181
GO:0043231 intracellular membrane-bounded organelle 3.05% (4/131) 2.29 0.009153 0.031181
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.53% (2/131) 3.69 0.010412 0.035183
GO:0098533 ATPase dependent transmembrane transport complex 0.76% (1/131) 6.21 0.013445 0.039396
GO:0042455 ribonucleoside biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 0.76% (1/131) 6.21 0.013445 0.039396
GO:0042451 purine nucleoside biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0046129 purine ribonucleoside biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0043190 ATP-binding cassette (ABC) transporter complex 0.76% (1/131) 6.21 0.013445 0.039396
GO:0009163 nucleoside biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:1901659 glycosyl compound biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0006433 prolyl-tRNA aminoacylation 0.76% (1/131) 6.21 0.013445 0.039396
GO:0004827 proline-tRNA ligase activity 0.76% (1/131) 6.21 0.013445 0.039396
GO:0000178 exosome (RNase complex) 0.76% (1/131) 6.21 0.013445 0.039396
GO:0030942 endoplasmic reticulum signal peptide binding 0.76% (1/131) 6.21 0.013445 0.039396
GO:0009112 nucleobase metabolic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0006526 arginine biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 0.76% (1/131) 6.21 0.013445 0.039396
GO:0005047 signal recognition particle binding 0.76% (1/131) 6.21 0.013445 0.039396
GO:0046112 nucleobase biosynthetic process 0.76% (1/131) 6.21 0.013445 0.039396
GO:0006420 arginyl-tRNA aminoacylation 0.76% (1/131) 6.21 0.013445 0.039396
GO:0004814 arginine-tRNA ligase activity 0.76% (1/131) 6.21 0.013445 0.039396
GO:1990234 transferase complex 1.53% (2/131) 3.35 0.016275 0.047357
GO:0043229 intracellular organelle 4.58% (6/131) 1.55 0.016939 0.048949
GO:0043226 organelle 4.58% (6/131) 1.55 0.017188 0.049327
GO:0055086 nucleobase-containing small molecule metabolic process 2.29% (3/131) 2.46 0.017465 0.049781
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_139 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.069 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_186 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.041 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_245 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.033 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.038 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.036 Archaeplastida Compare
Gingko biloba HCCA Cluster_248 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.035 Archaeplastida Compare
Zea mays HCCA Cluster_175 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_195 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_261 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_341 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.086 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_247 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_270 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_24 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.038 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_411 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_500 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.076 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.045 Archaeplastida Compare
Oryza sativa HCCA Cluster_180 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_204 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.041 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_36 0.024 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_108 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_130 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.024 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_185 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.045 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.056 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_259 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_275 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_62 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_98 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_111 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.035 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_201 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.031 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.053 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.036 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.022 Archaeplastida Compare
Sequences (131) (download table)

InterPro Domains

GO Terms

Family Terms