Coexpression cluster: Cluster_110 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 37.06% (73/197) 1.01 0.0 0.0
GO:0016070 RNA metabolic process 9.14% (18/197) 2.7 0.0 0.0
GO:0034660 ncRNA metabolic process 6.09% (12/197) 3.67 0.0 0.0
GO:0003676 nucleic acid binding 14.72% (29/197) 1.96 0.0 0.0
GO:0034470 ncRNA processing 4.57% (9/197) 3.99 0.0 0.0
GO:1901363 heterocyclic compound binding 24.37% (48/197) 1.25 0.0 0.0
GO:0097159 organic cyclic compound binding 24.37% (48/197) 1.25 0.0 0.0
GO:0090304 nucleic acid metabolic process 9.64% (19/197) 2.29 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 12.69% (25/197) 1.83 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 10.15% (20/197) 2.07 0.0 3e-06
GO:0006725 cellular aromatic compound metabolic process 10.66% (21/197) 1.98 0.0 3e-06
GO:0046483 heterocycle metabolic process 10.66% (21/197) 1.98 0.0 3e-06
GO:1901360 organic cyclic compound metabolic process 10.66% (21/197) 1.94 0.0 4e-06
GO:0003674 molecular_function 49.24% (97/197) 0.61 0.0 1.1e-05
GO:0032553 ribonucleotide binding 13.71% (27/197) 1.55 1e-06 1.4e-05
GO:0006396 RNA processing 5.08% (10/197) 2.99 1e-06 1.4e-05
GO:0035639 purine ribonucleoside triphosphate binding 13.2% (26/197) 1.57 1e-06 1.5e-05
GO:0097367 carbohydrate derivative binding 13.71% (27/197) 1.52 1e-06 1.7e-05
GO:0036094 small molecule binding 14.72% (29/197) 1.44 1e-06 2e-05
GO:0000166 nucleotide binding 14.21% (28/197) 1.45 1e-06 2.2e-05
GO:1901265 nucleoside phosphate binding 14.21% (28/197) 1.45 1e-06 2.2e-05
GO:0043168 anion binding 14.21% (28/197) 1.43 2e-06 2.6e-05
GO:0017076 purine nucleotide binding 13.2% (26/197) 1.5 2e-06 2.7e-05
GO:0032555 purine ribonucleotide binding 13.2% (26/197) 1.51 2e-06 2.7e-05
GO:0016072 rRNA metabolic process 2.54% (5/197) 4.36 4e-06 5.3e-05
GO:0006364 rRNA processing 2.54% (5/197) 4.36 4e-06 5.3e-05
GO:0006399 tRNA metabolic process 3.55% (7/197) 3.36 5e-06 7.2e-05
GO:0001510 RNA methylation 1.52% (3/197) 5.89 1e-05 0.000135
GO:0003723 RNA binding 5.08% (10/197) 2.37 2.6e-05 0.000339
GO:0009451 RNA modification 2.54% (5/197) 3.74 3.4e-05 0.000426
GO:0008144 drug binding 10.66% (21/197) 1.38 6.3e-05 0.000761
GO:0005524 ATP binding 10.15% (20/197) 1.41 6.9e-05 0.000801
GO:0043527 tRNA methyltransferase complex 1.02% (2/197) 6.62 0.000102 0.001064
GO:0031515 tRNA (m1A) methyltransferase complex 1.02% (2/197) 6.62 0.000102 0.001064
GO:0034708 methyltransferase complex 1.02% (2/197) 6.62 0.000102 0.001064
GO:0030488 tRNA methylation 1.02% (2/197) 6.62 0.000102 0.001064
GO:0032559 adenyl ribonucleotide binding 10.15% (20/197) 1.34 0.000139 0.001373
GO:0043170 macromolecule metabolic process 14.21% (28/197) 1.08 0.000137 0.001383
GO:0030554 adenyl nucleotide binding 10.15% (20/197) 1.33 0.000144 0.001384
GO:0006807 nitrogen compound metabolic process 15.23% (30/197) 1.02 0.000163 0.001528
GO:0008033 tRNA processing 2.03% (4/197) 3.72 0.000229 0.002088
GO:0008536 Ran GTPase binding 1.52% (3/197) 4.51 0.000273 0.002429
GO:0140098 catalytic activity, acting on RNA 3.55% (7/197) 2.46 0.000289 0.002512
GO:0140101 catalytic activity, acting on a tRNA 2.54% (5/197) 3.09 0.000302 0.00257
GO:0004386 helicase activity 2.03% (4/197) 3.58 0.000334 0.002774
GO:0043414 macromolecule methylation 1.52% (3/197) 4.4 0.000345 0.002801
GO:0008173 RNA methyltransferase activity 1.52% (3/197) 4.3 0.000427 0.003263
GO:0031267 small GTPase binding 1.52% (3/197) 4.3 0.000427 0.003263
GO:0017016 Ras GTPase binding 1.52% (3/197) 4.3 0.000427 0.003263
GO:0044237 cellular metabolic process 15.23% (30/197) 0.9 0.000668 0.004993
GO:0051020 GTPase binding 1.52% (3/197) 4.04 0.00075 0.005497
GO:0005515 protein binding 12.69% (25/197) 0.98 0.000894 0.006433
GO:0043167 ion binding 15.23% (30/197) 0.87 0.000939 0.006628
GO:0008175 tRNA methyltransferase activity 1.02% (2/197) 5.3 0.001003 0.006823
GO:0005730 nucleolus 1.02% (2/197) 5.3 0.001003 0.006823
GO:0032259 methylation 1.52% (3/197) 3.82 0.001195 0.00784
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.52% (3/197) 3.82 0.001195 0.00784
GO:0032561 guanyl ribonucleotide binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0032550 purine ribonucleoside binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0032549 ribonucleoside binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0001883 purine nucleoside binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0001882 nucleoside binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0005525 GTP binding 3.05% (6/197) 2.28 0.001541 0.009146
GO:0019001 guanyl nucleotide binding 3.05% (6/197) 2.25 0.001674 0.009782
GO:0019899 enzyme binding 1.52% (3/197) 3.56 0.002006 0.011539
GO:0017111 nucleoside-triphosphatase activity 4.57% (9/197) 1.68 0.002139 0.01212
GO:0009987 cellular process 16.24% (32/197) 0.75 0.002314 0.012918
GO:0016462 pyrophosphatase activity 4.57% (9/197) 1.62 0.002777 0.015271
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.57% (9/197) 1.61 0.002907 0.015758
GO:0016817 hydrolase activity, acting on acid anhydrides 4.57% (9/197) 1.61 0.002974 0.015891
GO:0006418 tRNA aminoacylation for protein translation 1.52% (3/197) 3.12 0.00488 0.025708
GO:0043039 tRNA aminoacylation 1.52% (3/197) 3.0 0.006198 0.030906
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.52% (3/197) 3.0 0.006198 0.030906
GO:0004812 aminoacyl-tRNA ligase activity 1.52% (3/197) 3.0 0.006198 0.030906
GO:0043038 amino acid activation 1.52% (3/197) 3.0 0.006198 0.030906
GO:0003678 DNA helicase activity 1.02% (2/197) 3.92 0.007419 0.036509
GO:0044424 intracellular part 7.11% (14/197) 1.01 0.010171 0.038039
GO:0090501 RNA phosphodiester bond hydrolysis 0.51% (1/197) 6.62 0.010144 0.038321
GO:0019206 nucleoside kinase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0000469 cleavage involved in rRNA processing 0.51% (1/197) 6.62 0.010144 0.038321
GO:0019136 deoxynucleoside kinase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0016426 tRNA (adenine) methyltransferase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0004797 thymidine kinase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0006189 'de novo' IMP biosynthetic process 0.51% (1/197) 6.62 0.010144 0.038321
GO:0000176 nuclear exosome (RNase complex) 0.51% (1/197) 6.62 0.010144 0.038321
GO:0090305 nucleic acid phosphodiester bond hydrolysis 0.51% (1/197) 6.62 0.010144 0.038321
GO:0070476 rRNA (guanine-N7)-methylation 0.51% (1/197) 6.62 0.010144 0.038321
GO:0043461 proton-transporting ATP synthase complex assembly 0.51% (1/197) 6.62 0.010144 0.038321
GO:0070475 rRNA base methylation 0.51% (1/197) 6.62 0.010144 0.038321
GO:0036265 RNA (guanine-N7)-methylation 0.51% (1/197) 6.62 0.010144 0.038321
GO:0031167 rRNA methylation 0.51% (1/197) 6.62 0.010144 0.038321
GO:0016435 rRNA (guanine) methyltransferase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0004819 glutamine-tRNA ligase activity 0.51% (1/197) 6.62 0.010144 0.038321
GO:0006425 glutaminyl-tRNA aminoacylation 0.51% (1/197) 6.62 0.010144 0.038321
GO:0000154 rRNA modification 0.51% (1/197) 6.62 0.010144 0.038321
GO:0043228 non-membrane-bounded organelle 3.05% (6/197) 1.69 0.01105 0.040515
GO:0043232 intracellular non-membrane-bounded organelle 3.05% (6/197) 1.69 0.01105 0.040515
GO:0006400 tRNA modification 1.02% (2/197) 3.82 0.008598 0.041226
GO:0016741 transferase activity, transferring one-carbon groups 3.05% (6/197) 1.77 0.008754 0.041445
GO:0044238 primary metabolic process 14.72% (29/197) 0.67 0.008534 0.041451
GO:1902494 catalytic complex 2.03% (4/197) 2.18 0.011885 0.043154
GO:0071704 organic substance metabolic process 15.23% (30/197) 0.64 0.009341 0.043669
GO:0009982 pseudouridine synthase activity 1.02% (2/197) 3.54 0.012596 0.045297
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_22 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.041 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_76 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_127 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_145 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.035 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.042 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.058 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_262 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_244 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_257 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_263 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.051 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.042 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.045 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.042 Archaeplastida Compare
Gingko biloba HCCA Cluster_318 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_329 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_201 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.062 Archaeplastida Compare
Zea mays HCCA Cluster_232 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_276 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_81 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.066 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.048 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_176 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.071 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_272 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.04 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.052 Archaeplastida Compare
Picea abies HCCA Cluster_427 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_486 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_495 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_498 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.113 Archaeplastida Compare
Oryza sativa HCCA Cluster_140 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_219 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_298 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_318 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.033 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.057 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.039 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.086 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_127 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.045 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_223 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.042 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.042 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.042 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.06 Archaeplastida Compare
Vitis vinifera HCCA Cluster_242 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.058 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.02 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.106 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_77 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_87 0.02 Archaeplastida Compare
Sequences (197) (download table)

InterPro Domains

GO Terms

Family Terms