Coexpression cluster: Cluster_220 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 7.56% (13/172) 3.26 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 8.14% (14/172) 2.94 0.0 1e-06
GO:0046483 heterocycle metabolic process 8.14% (14/172) 2.77 0.0 2e-06
GO:0006725 cellular aromatic compound metabolic process 8.14% (14/172) 2.72 0.0 3e-06
GO:0016070 RNA metabolic process 5.81% (10/172) 3.4 0.0 3e-06
GO:1901360 organic cyclic compound metabolic process 8.14% (14/172) 2.65 0.0 3e-06
GO:0043170 macromolecule metabolic process 15.12% (26/172) 1.63 0.0 1.2e-05
GO:0044237 cellular metabolic process 16.28% (28/172) 1.54 0.0 1.3e-05
GO:0034641 cellular nitrogen compound metabolic process 8.14% (14/172) 2.3 1e-06 3.6e-05
GO:0006807 nitrogen compound metabolic process 15.12% (26/172) 1.51 2e-06 4.1e-05
GO:0003676 nucleic acid binding 10.47% (18/172) 1.88 2e-06 6e-05
GO:0034660 ncRNA metabolic process 2.91% (5/172) 4.01 1.6e-05 0.000367
GO:0003723 RNA binding 4.07% (7/172) 3.04 2.7e-05 0.000557
GO:0016779 nucleotidyltransferase activity 2.91% (5/172) 3.83 3e-05 0.000575
GO:0009987 cellular process 16.28% (28/172) 1.19 3.7e-05 0.000679
GO:0005488 binding 26.16% (45/172) 0.86 4.1e-05 0.000699
GO:0044238 primary metabolic process 15.7% (27/172) 1.2 4.5e-05 0.000719
GO:0071704 organic substance metabolic process 15.7% (27/172) 1.14 9.6e-05 0.001443
GO:0006399 tRNA metabolic process 2.33% (4/172) 4.03 0.000114 0.001627
GO:1901363 heterocyclic compound binding 17.44% (30/172) 1.04 0.000129 0.001667
GO:0097159 organic cyclic compound binding 17.44% (30/172) 1.04 0.000129 0.001667
GO:0035639 purine ribonucleoside triphosphate binding 9.3% (16/172) 1.49 0.000218 0.0027
GO:0016579 protein deubiquitination 1.74% (3/172) 4.6 0.000268 0.003042
GO:0070646 protein modification by small protein removal 1.74% (3/172) 4.6 0.000268 0.003042
GO:0101005 ubiquitinyl hydrolase activity 1.74% (3/172) 4.48 0.00034 0.003306
GO:0019783 ubiquitin-like protein-specific protease activity 1.74% (3/172) 4.48 0.00034 0.003306
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity 1.74% (3/172) 4.48 0.00034 0.003306
GO:0008152 metabolic process 19.19% (33/172) 0.9 0.000306 0.003331
GO:0006396 RNA processing 2.33% (4/172) 3.48 0.000487 0.004565
GO:0005524 ATP binding 8.14% (14/172) 1.48 0.00058 0.00464
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.74% (3/172) 4.23 0.000572 0.004711
GO:0043039 tRNA aminoacylation 1.74% (3/172) 4.23 0.000572 0.004711
GO:0043038 amino acid activation 1.74% (3/172) 4.23 0.000572 0.004711
GO:0004812 aminoacyl-tRNA ligase activity 1.74% (3/172) 4.23 0.000572 0.004711
GO:0008144 drug binding 8.14% (14/172) 1.39 0.001033 0.008027
GO:0006298 mismatch repair 1.16% (2/172) 5.35 0.001101 0.008091
GO:0030983 mismatched DNA binding 1.16% (2/172) 5.35 0.001101 0.008091
GO:0044260 cellular macromolecule metabolic process 9.3% (16/172) 1.25 0.001245 0.008911
GO:0140101 catalytic activity, acting on a tRNA 1.74% (3/172) 3.77 0.001429 0.009967
GO:0006281 DNA repair 1.74% (3/172) 3.74 0.001528 0.01039
GO:0006974 cellular response to DNA damage stimulus 1.74% (3/172) 3.6 0.002025 0.012518
GO:0051716 cellular response to stimulus 1.74% (3/172) 3.6 0.002025 0.012518
GO:0033554 cellular response to stress 1.74% (3/172) 3.6 0.002025 0.012518
GO:0008234 cysteine-type peptidase activity 1.74% (3/172) 3.6 0.002025 0.012518
GO:0032555 purine ribonucleotide binding 9.3% (16/172) 1.17 0.002128 0.012861
GO:0017076 purine nucleotide binding 9.3% (16/172) 1.17 0.002182 0.012904
GO:0032553 ribonucleotide binding 9.3% (16/172) 1.16 0.002395 0.01386
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER 0.58% (1/172) 8.6 0.002581 0.014042
GO:0050290 sphingomyelin phosphodiesterase D activity 0.58% (1/172) 8.6 0.002581 0.014042
GO:0097367 carbohydrate derivative binding 9.3% (16/172) 1.15 0.00257 0.014563
GO:0005515 protein binding 9.3% (16/172) 1.08 0.003897 0.020786
GO:0140098 catalytic activity, acting on RNA 2.33% (4/172) 2.61 0.004404 0.023034
GO:0030554 adenyl nucleotide binding 8.14% (14/172) 1.12 0.005372 0.024764
GO:1901265 nucleoside phosphate binding 9.3% (16/172) 1.05 0.004923 0.024796
GO:0000166 nucleotide binding 9.3% (16/172) 1.05 0.004923 0.024796
GO:0032559 adenyl ribonucleotide binding 8.14% (14/172) 1.13 0.005298 0.024847
GO:0006425 glutaminyl-tRNA aminoacylation 0.58% (1/172) 7.6 0.005156 0.025044
GO:0004819 glutamine-tRNA ligase activity 0.58% (1/172) 7.6 0.005156 0.025044
GO:0070647 protein modification by small protein conjugation or removal 1.74% (3/172) 3.11 0.005282 0.025204
GO:0016772 transferase activity, transferring phosphorus-containing groups 6.4% (11/172) 1.27 0.006361 0.028837
GO:0043168 anion binding 9.3% (16/172) 1.0 0.006696 0.029857
GO:0004484 mRNA guanylyltransferase activity 0.58% (1/172) 7.01 0.007724 0.032323
GO:0031369 translation initiation factor binding 0.58% (1/172) 7.01 0.007724 0.032323
GO:0006370 7-methylguanosine mRNA capping 0.58% (1/172) 7.01 0.007724 0.032323
GO:0016874 ligase activity 1.74% (3/172) 2.89 0.007997 0.032959
GO:0036094 small molecule binding 9.3% (16/172) 0.98 0.007549 0.033119
GO:0006508 proteolysis 2.91% (5/172) 2.02 0.008287 0.033642
GO:0006418 tRNA aminoacylation for protein translation 1.16% (2/172) 3.84 0.008681 0.03422
GO:0006259 DNA metabolic process 1.74% (3/172) 2.85 0.008564 0.034257
GO:0003674 molecular_function 32.56% (56/172) 0.42 0.009383 0.03646
GO:0070568 guanylyltransferase activity 0.58% (1/172) 6.6 0.010286 0.037303
GO:0008192 RNA guanylyltransferase activity 0.58% (1/172) 6.6 0.010286 0.037303
GO:0006366 transcription by RNA polymerase II 0.58% (1/172) 6.6 0.010286 0.037303
GO:0030688 preribosome, small subunit precursor 0.58% (1/172) 6.6 0.010286 0.037303
GO:0034470 ncRNA processing 1.16% (2/172) 3.74 0.00996 0.038157
GO:0036260 RNA capping 0.58% (1/172) 6.28 0.012841 0.043658
GO:0009452 7-methylguanosine RNA capping 0.58% (1/172) 6.28 0.012841 0.043658
GO:0004620 phospholipase activity 0.58% (1/172) 6.28 0.012841 0.043658
GO:0098796 membrane protein complex 1.74% (3/172) 2.64 0.012636 0.044635
GO:1901564 organonitrogen compound metabolic process 8.72% (15/172) 0.94 0.012598 0.045088
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_11 0.052 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_23 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_24 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_40 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_99 0.035 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_101 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_114 0.05 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_139 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_147 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_163 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_179 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.034 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_194 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.035 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_277 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_132 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.035 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_213 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_233 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_246 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_14 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_41 0.043 Archaeplastida Compare
Gingko biloba HCCA Cluster_92 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_155 0.03 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.046 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_223 0.045 Archaeplastida Compare
Gingko biloba HCCA Cluster_289 0.048 Archaeplastida Compare
Gingko biloba HCCA Cluster_306 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_312 0.035 Archaeplastida Compare
Gingko biloba HCCA Cluster_324 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_328 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_30 0.035 Archaeplastida Compare
Zea mays HCCA Cluster_61 0.073 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_136 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_145 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.05 Archaeplastida Compare
Zea mays HCCA Cluster_267 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.037 Archaeplastida Compare
Zea mays HCCA Cluster_322 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_352 0.052 Archaeplastida Compare
Zea mays HCCA Cluster_354 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_22 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_61 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_68 0.043 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_72 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_111 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_156 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_166 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_87 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.041 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_126 0.051 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_146 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_158 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_169 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_235 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_293 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_64 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_136 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_210 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_244 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_250 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_277 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.086 Archaeplastida Compare
Picea abies HCCA Cluster_420 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_491 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_522 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_523 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_40 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_42 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_72 0.048 Archaeplastida Compare
Oryza sativa HCCA Cluster_112 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.06 Archaeplastida Compare
Oryza sativa HCCA Cluster_211 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_219 0.043 Archaeplastida Compare
Oryza sativa HCCA Cluster_227 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_269 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_84 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_108 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_141 0.043 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_201 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_213 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_22 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_79 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_127 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.046 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_173 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_182 0.042 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_217 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_233 0.047 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_250 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_259 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_263 0.035 Archaeplastida Compare
Vitis vinifera HCCA Cluster_54 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_56 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_92 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_106 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.073 Archaeplastida Compare
Vitis vinifera HCCA Cluster_167 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.048 Archaeplastida Compare
Vitis vinifera HCCA Cluster_220 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_233 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_238 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_241 0.028 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_62 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_95 0.038 Archaeplastida Compare
Sequences (172) (download table)

InterPro Domains

GO Terms

Family Terms