Coexpression cluster: Cluster_200 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 10.11% (9/89) 3.47 0.0 4e-05
GO:0034641 cellular nitrogen compound metabolic process 14.61% (13/89) 2.44 1e-06 0.000119
GO:0140101 catalytic activity, acting on a tRNA 5.62% (5/89) 4.69 2e-06 0.000158
GO:0006399 tRNA metabolic process 5.62% (5/89) 4.52 3e-06 0.000207
GO:0006139 nucleobase-containing compound metabolic process 11.24% (10/89) 2.65 5e-06 0.000231
GO:0090304 nucleic acid metabolic process 10.11% (9/89) 2.85 5e-06 0.000271
GO:0034660 ncRNA metabolic process 5.62% (5/89) 4.2 8e-06 0.000357
GO:0006725 cellular aromatic compound metabolic process 11.24% (10/89) 2.5 1.1e-05 0.000368
GO:0046483 heterocycle metabolic process 11.24% (10/89) 2.52 1e-05 0.000374
GO:1901360 organic cyclic compound metabolic process 11.24% (10/89) 2.47 1.3e-05 0.000398
GO:0140098 catalytic activity, acting on RNA 6.74% (6/89) 3.33 3.1e-05 0.000856
GO:0016874 ligase activity 4.49% (4/89) 4.13 8.4e-05 0.00209
GO:0044237 cellular metabolic process 21.35% (19/89) 1.34 0.000137 0.003148
GO:0006807 nitrogen compound metabolic process 21.35% (19/89) 1.26 0.000281 0.004205
GO:0009987 cellular process 22.47% (20/89) 1.21 0.00028 0.0044
GO:0004812 aminoacyl-tRNA ligase activity 3.37% (3/89) 4.59 0.000271 0.004499
GO:0043038 amino acid activation 3.37% (3/89) 4.59 0.000271 0.004499
GO:0043039 tRNA aminoacylation 3.37% (3/89) 4.59 0.000271 0.004499
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.37% (3/89) 4.59 0.000271 0.004499
GO:0006520 cellular amino acid metabolic process 4.49% (4/89) 3.62 0.000328 0.004664
GO:0006418 tRNA aminoacylation for protein translation 3.37% (3/89) 4.67 0.000232 0.004955
GO:0044281 small molecule metabolic process 6.74% (6/89) 2.65 0.000411 0.005587
GO:0042254 ribosome biogenesis 2.25% (2/89) 5.98 0.000454 0.0059
GO:0022613 ribonucleoprotein complex biogenesis 2.25% (2/89) 5.89 0.000518 0.006453
GO:0051604 protein maturation 2.25% (2/89) 5.57 0.000816 0.009755
GO:0044238 primary metabolic process 22.47% (20/89) 1.09 0.000869 0.00999
GO:0043170 macromolecule metabolic process 19.1% (17/89) 1.2 0.000944 0.010453
GO:0071704 organic substance metabolic process 22.47% (20/89) 1.04 0.00128 0.013667
GO:0008168 methyltransferase activity 4.49% (4/89) 3.0 0.001631 0.016821
GO:0090501 RNA phosphodiester bond hydrolysis 1.12% (1/89) 8.89 0.00211 0.017521
GO:0019781 NEDD8 activating enzyme activity 1.12% (1/89) 8.89 0.00211 0.017521
GO:0000469 cleavage involved in rRNA processing 1.12% (1/89) 8.89 0.00211 0.017521
GO:0004140 dephospho-CoA kinase activity 1.12% (1/89) 8.89 0.00211 0.017521
GO:0090305 nucleic acid phosphodiester bond hydrolysis 1.12% (1/89) 8.89 0.00211 0.017521
GO:0045116 protein neddylation 1.12% (1/89) 8.89 0.00211 0.017521
GO:0016741 transferase activity, transferring one-carbon groups 4.49% (4/89) 2.94 0.001896 0.0189
GO:0044085 cellular component biogenesis 2.25% (2/89) 4.72 0.002646 0.021381
GO:0005515 protein binding 14.61% (13/89) 1.27 0.002745 0.021597
GO:0008152 metabolic process 25.84% (23/89) 0.85 0.003001 0.023009
GO:0006082 organic acid metabolic process 4.49% (4/89) 2.71 0.003377 0.023484
GO:0043436 oxoacid metabolic process 4.49% (4/89) 2.71 0.003336 0.023749
GO:0019752 carboxylic acid metabolic process 4.49% (4/89) 2.71 0.003336 0.023749
GO:0003723 RNA binding 4.49% (4/89) 2.72 0.003255 0.024327
GO:0004814 arginine-tRNA ligase activity 1.12% (1/89) 7.89 0.004215 0.025204
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 1.12% (1/89) 7.89 0.004215 0.025204
GO:0034227 tRNA thio-modification 1.12% (1/89) 7.89 0.004215 0.025204
GO:0000347 THO complex 1.12% (1/89) 7.89 0.004215 0.025204
GO:0000445 THO complex part of transcription export complex 1.12% (1/89) 7.89 0.004215 0.025204
GO:0006420 arginyl-tRNA aminoacylation 1.12% (1/89) 7.89 0.004215 0.025204
GO:0006396 RNA processing 3.37% (3/89) 3.19 0.004463 0.026166
GO:0008033 tRNA processing 2.25% (2/89) 4.43 0.00393 0.026704
GO:0044422 organelle part 4.49% (4/89) 2.49 0.005792 0.032072
GO:0044446 intracellular organelle part 4.49% (4/89) 2.49 0.005792 0.032072
GO:0033866 nucleoside bisphosphate biosynthetic process 1.12% (1/89) 7.3 0.006315 0.032557
GO:0034033 purine nucleoside bisphosphate biosynthetic process 1.12% (1/89) 7.3 0.006315 0.032557
GO:0034030 ribonucleoside bisphosphate biosynthetic process 1.12% (1/89) 7.3 0.006315 0.032557
GO:0015937 coenzyme A biosynthetic process 1.12% (1/89) 7.3 0.006315 0.032557
GO:0009058 biosynthetic process 7.87% (7/89) 1.71 0.005741 0.033011
GO:0051540 metal cluster binding 2.25% (2/89) 3.84 0.008647 0.038588
GO:0051536 iron-sulfur cluster binding 2.25% (2/89) 3.84 0.008647 0.038588
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.12% (1/89) 6.89 0.008412 0.038694
GO:0000439 transcription factor TFIIH core complex 1.12% (1/89) 6.89 0.008412 0.038694
GO:0042803 protein homodimerization activity 1.12% (1/89) 6.89 0.008412 0.038694
GO:0000774 adenyl-nucleotide exchange factor activity 1.12% (1/89) 6.89 0.008412 0.038694
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.12% (1/89) 6.89 0.008412 0.038694
GO:0042802 identical protein binding 1.12% (1/89) 6.89 0.008412 0.038694
GO:0009089 lysine biosynthetic process via diaminopimelate 1.12% (1/89) 6.57 0.010504 0.042441
GO:0002098 tRNA wobble uridine modification 1.12% (1/89) 6.57 0.010504 0.042441
GO:0006553 lysine metabolic process 1.12% (1/89) 6.57 0.010504 0.042441
GO:0046451 diaminopimelate metabolic process 1.12% (1/89) 6.57 0.010504 0.042441
GO:0009085 lysine biosynthetic process 1.12% (1/89) 6.57 0.010504 0.042441
GO:0044271 cellular nitrogen compound biosynthetic process 5.62% (5/89) 2.0 0.008395 0.042544
GO:0034470 ncRNA processing 2.25% (2/89) 3.76 0.009682 0.042574
GO:0044249 cellular biosynthetic process 6.74% (6/89) 1.71 0.010288 0.044581
GO:0000049 tRNA binding 1.12% (1/89) 6.3 0.012592 0.047061
GO:0002097 tRNA wobble base modification 1.12% (1/89) 6.3 0.012592 0.047061
GO:0004177 aminopeptidase activity 1.12% (1/89) 6.3 0.012592 0.047061
GO:0006465 signal peptide processing 1.12% (1/89) 6.3 0.012592 0.047061
GO:0005787 signal peptidase complex 1.12% (1/89) 6.3 0.012592 0.047061
GO:0015936 coenzyme A metabolic process 1.12% (1/89) 6.3 0.012592 0.047061
GO:1901576 organic substance biosynthetic process 6.74% (6/89) 1.64 0.012939 0.047762
GO:0044424 intracellular part 7.87% (7/89) 1.48 0.013167 0.04801
GO:0034654 nucleobase-containing compound biosynthetic process 3.37% (3/89) 2.59 0.013791 0.04968
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_109 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_127 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_147 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_42 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_160 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_212 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_257 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_262 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_313 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_323 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_337 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_186 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_250 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_261 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_179 0.039 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_180 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.057 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_531 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_375 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_473 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_482 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_242 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_353 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.034 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_178 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_249 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_283 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_284 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_24 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_119 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.052 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_200 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_92 0.035 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_112 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.045 Archaeplastida Compare
Sequences (89) (download table)

InterPro Domains

GO Terms

Family Terms