Coexpression cluster: Cluster_5 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034645 cellular macromolecule biosynthetic process 41.27% (26/63) 4.72 0.0 0.0
GO:0009059 macromolecule biosynthetic process 41.27% (26/63) 4.64 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 49.21% (31/63) 3.92 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 41.27% (26/63) 4.44 0.0 0.0
GO:0044249 cellular biosynthetic process 41.27% (26/63) 3.98 0.0 0.0
GO:1901576 organic substance biosynthetic process 41.27% (26/63) 3.91 0.0 0.0
GO:0009058 biosynthetic process 41.27% (26/63) 3.77 0.0 0.0
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 19.05% (12/63) 6.91 0.0 0.0
GO:0034062 5'-3' RNA polymerase activity 19.05% (12/63) 6.76 0.0 0.0
GO:0097747 RNA polymerase activity 19.05% (12/63) 6.76 0.0 0.0
GO:0044237 cellular metabolic process 53.97% (34/63) 2.56 0.0 0.0
GO:0016070 RNA metabolic process 26.98% (17/63) 4.5 0.0 0.0
GO:0097659 nucleic acid-templated transcription 19.05% (12/63) 5.88 0.0 0.0
GO:0006351 transcription, DNA-templated 19.05% (12/63) 5.88 0.0 0.0
GO:0016779 nucleotidyltransferase activity 19.05% (12/63) 5.86 0.0 0.0
GO:0043170 macromolecule metabolic process 49.21% (31/63) 2.65 0.0 0.0
GO:0009987 cellular process 55.56% (35/63) 2.35 0.0 0.0
GO:0032774 RNA biosynthetic process 19.05% (12/63) 5.5 0.0 0.0
GO:0006807 nitrogen compound metabolic process 49.21% (31/63) 2.53 0.0 0.0
GO:0090304 nucleic acid metabolic process 26.98% (17/63) 4.14 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 41.27% (26/63) 2.76 0.0 0.0
GO:0005840 ribosome 22.22% (14/63) 4.5 0.0 0.0
GO:0006412 translation 22.22% (14/63) 4.46 0.0 0.0
GO:0043043 peptide biosynthetic process 22.22% (14/63) 4.44 0.0 0.0
GO:0003735 structural constituent of ribosome 22.22% (14/63) 4.45 0.0 0.0
GO:0008152 metabolic process 58.73% (37/63) 1.95 0.0 0.0
GO:0043604 amide biosynthetic process 22.22% (14/63) 4.41 0.0 0.0
GO:0006518 peptide metabolic process 22.22% (14/63) 4.41 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 19.05% (12/63) 4.98 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 22.22% (14/63) 4.36 0.0 0.0
GO:0043228 non-membrane-bounded organelle 22.22% (14/63) 4.36 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 26.98% (17/63) 3.74 0.0 0.0
GO:0043603 cellular amide metabolic process 22.22% (14/63) 4.37 0.0 0.0
GO:1990904 ribonucleoprotein complex 22.22% (14/63) 4.34 0.0 0.0
GO:0005198 structural molecule activity 22.22% (14/63) 4.34 0.0 0.0
GO:0044238 primary metabolic process 49.21% (31/63) 2.24 0.0 0.0
GO:0046483 heterocycle metabolic process 26.98% (17/63) 3.62 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 26.98% (17/63) 3.61 0.0 0.0
GO:0071704 organic substance metabolic process 49.21% (31/63) 2.18 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 26.98% (17/63) 3.57 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 19.05% (12/63) 4.68 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 19.05% (12/63) 4.44 0.0 0.0
GO:0018130 heterocycle biosynthetic process 19.05% (12/63) 4.44 0.0 0.0
GO:0032991 protein-containing complex 26.98% (17/63) 3.34 0.0 0.0
GO:0044444 cytoplasmic part 23.81% (15/63) 3.65 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 19.05% (12/63) 4.3 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 22.22% (14/63) 3.8 0.0 0.0
GO:0043226 organelle 23.81% (15/63) 3.56 0.0 0.0
GO:0043229 intracellular organelle 23.81% (15/63) 3.56 0.0 0.0
GO:0044424 intracellular part 30.16% (19/63) 2.93 0.0 0.0
GO:0044464 cell part 30.16% (19/63) 2.88 0.0 0.0
GO:0008150 biological_process 60.32% (38/63) 1.39 0.0 0.0
GO:0006397 mRNA processing 7.94% (5/63) 5.82 0.0 0.0
GO:0016071 mRNA metabolic process 7.94% (5/63) 5.59 0.0 0.0
GO:0005575 cellular_component 30.16% (19/63) 1.83 1e-06 2e-06
GO:0044267 cellular protein metabolic process 22.22% (14/63) 2.19 2e-06 4e-06
GO:0016772 transferase activity, transferring phosphorus-containing groups 19.05% (12/63) 2.32 4e-06 9e-06
GO:0003677 DNA binding 15.87% (10/63) 2.52 9e-06 1.8e-05
GO:0019538 protein metabolic process 22.22% (14/63) 1.89 1.7e-05 3.5e-05
GO:0048038 quinone binding 4.76% (3/63) 5.86 1.9e-05 3.9e-05
GO:0006396 RNA processing 7.94% (5/63) 3.85 2.6e-05 5.3e-05
GO:0015979 photosynthesis 6.35% (4/63) 4.48 3.2e-05 6.4e-05
GO:0003676 nucleic acid binding 19.05% (12/63) 1.94 5.3e-05 0.000103
GO:1901564 organonitrogen compound metabolic process 22.22% (14/63) 1.66 9.5e-05 0.000182
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.76% (3/63) 4.88 0.000148 0.000277
GO:0051287 NAD binding 4.76% (3/63) 4.76 0.000191 0.000353
GO:0009521 photosystem 4.76% (3/63) 4.44 0.00037 0.000673
GO:0044436 thylakoid part 4.76% (3/63) 4.29 0.000498 0.000893
GO:0009522 photosystem I 3.17% (2/63) 5.62 0.000759 0.001342
GO:0016740 transferase activity 19.05% (12/63) 1.47 0.001061 0.00185
GO:0019843 rRNA binding 3.17% (2/63) 5.32 0.001146 0.001969
GO:0003674 molecular_function 53.97% (34/63) 0.61 0.001857 0.003147
GO:0009579 thylakoid 3.17% (2/63) 4.76 0.002508 0.004191
GO:0097159 organic cyclic compound binding 25.4% (16/63) 1.05 0.003322 0.005405
GO:1901363 heterocyclic compound binding 25.4% (16/63) 1.05 0.003322 0.005405
GO:0031647 regulation of protein stability 1.59% (1/63) 7.49 0.005536 0.00866
GO:0050821 protein stabilization 1.59% (1/63) 7.49 0.005536 0.00866
GO:0042301 phosphate ion binding 1.59% (1/63) 7.49 0.005536 0.00866
GO:0098796 membrane protein complex 4.76% (3/63) 2.95 0.006984 0.010785
GO:0050662 coenzyme binding 4.76% (3/63) 2.45 0.017719 0.027022
GO:0005488 binding 31.75% (20/63) 0.66 0.019508 0.029383
GO:0017004 cytochrome complex assembly 1.59% (1/63) 5.17 0.027382 0.04074
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_61 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_107 0.293 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_92 0.148 Archaeplastida Compare
Gingko biloba HCCA Cluster_30 0.058 Archaeplastida Compare
Gingko biloba HCCA Cluster_78 0.08 Archaeplastida Compare
Gingko biloba HCCA Cluster_89 0.067 Archaeplastida Compare
Gingko biloba HCCA Cluster_297 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_44 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_45 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_83 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_109 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_160 0.111 Archaeplastida Compare
Zea mays HCCA Cluster_246 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_255 0.098 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_2 0.052 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_8 0.048 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_140 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_154 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_236 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_132 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_125 0.292 Archaeplastida Compare
Oryza sativa HCCA Cluster_233 0.062 Archaeplastida Compare
Oryza sativa HCCA Cluster_238 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_27 0.118 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_61 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_1 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_3 0.051 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_4 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_16 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_24 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_34 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.039 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_83 0.173 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_87 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_90 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_108 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_113 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_149 0.08 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_174 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_199 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_287 0.059 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_312 0.037 Archaeplastida Compare
Vitis vinifera HCCA Cluster_25 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_99 0.047 Archaeplastida Compare
Vitis vinifera HCCA Cluster_165 0.02 Archaeplastida Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms