Coexpression cluster: Cluster_178 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0033014 tetrapyrrole biosynthetic process 5.41% (4/74) 6.67 0.0 6e-06
GO:0034641 cellular nitrogen compound metabolic process 18.92% (14/74) 2.62 0.0 1.1e-05
GO:0033013 tetrapyrrole metabolic process 5.41% (4/74) 6.23 0.0 1.6e-05
GO:0006725 cellular aromatic compound metabolic process 14.86% (11/74) 2.71 1e-06 3.9e-05
GO:1901360 organic cyclic compound metabolic process 14.86% (11/74) 2.66 1e-06 4.4e-05
GO:0046483 heterocycle metabolic process 14.86% (11/74) 2.71 1e-06 4.8e-05
GO:0009987 cellular process 29.73% (22/74) 1.41 1.2e-05 0.000367
GO:0016070 RNA metabolic process 9.46% (7/74) 3.01 2.7e-05 0.000746
GO:0044271 cellular nitrogen compound biosynthetic process 10.81% (8/74) 2.71 3e-05 0.000746
GO:0006807 nitrogen compound metabolic process 24.32% (18/74) 1.48 4.9e-05 0.000915
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 2.7% (2/74) 7.48 4.7e-05 0.000943
GO:0004784 superoxide dismutase activity 2.7% (2/74) 7.48 4.7e-05 0.000943
GO:0044237 cellular metabolic process 24.32% (18/74) 1.44 7.1e-05 0.001216
GO:1901566 organonitrogen compound biosynthetic process 9.46% (7/74) 2.75 8.2e-05 0.001301
GO:0006457 protein folding 4.05% (3/74) 5.06 0.0001 0.001479
GO:0140098 catalytic activity, acting on RNA 6.76% (5/74) 3.38 0.000122 0.001699
GO:0006779 porphyrin-containing compound biosynthetic process 2.7% (2/74) 6.67 0.000162 0.001901
GO:0006399 tRNA metabolic process 5.41% (4/74) 3.89 0.000157 0.001941
GO:0044249 cellular biosynthetic process 12.16% (9/74) 2.19 0.000155 0.002032
GO:0090304 nucleic acid metabolic process 9.46% (7/74) 2.55 0.000195 0.002173
GO:1901576 organic substance biosynthetic process 12.16% (9/74) 2.1 0.000238 0.002415
GO:0071704 organic substance metabolic process 27.03% (20/74) 1.21 0.000232 0.002467
GO:0006418 tRNA aminoacylation for protein translation 4.05% (3/74) 4.51 0.000316 0.002932
GO:0034660 ncRNA metabolic process 5.41% (4/74) 3.63 0.000313 0.003037
GO:0019438 aromatic compound biosynthetic process 6.76% (5/74) 2.98 0.000434 0.003581
GO:0072593 reactive oxygen species metabolic process 2.7% (2/74) 6.02 0.000421 0.003612
GO:0006801 superoxide metabolic process 2.7% (2/74) 6.02 0.000421 0.003612
GO:0006778 porphyrin-containing compound metabolic process 2.7% (2/74) 5.89 0.000504 0.003879
GO:0018130 heterocycle biosynthetic process 6.76% (5/74) 2.95 0.000489 0.003893
GO:0009058 biosynthetic process 12.16% (9/74) 1.9 0.000657 0.00431
GO:0004812 aminoacyl-tRNA ligase activity 4.05% (3/74) 4.15 0.000649 0.004385
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.05% (3/74) 4.15 0.000649 0.004385
GO:0043038 amino acid activation 4.05% (3/74) 4.18 0.000618 0.004443
GO:0043039 tRNA aminoacylation 4.05% (3/74) 4.18 0.000618 0.004443
GO:0043170 macromolecule metabolic process 20.27% (15/74) 1.33 0.000725 0.004493
GO:1901564 organonitrogen compound metabolic process 18.92% (14/74) 1.4 0.000708 0.004511
GO:1901362 organic cyclic compound biosynthetic process 6.76% (5/74) 2.8 0.000764 0.004603
GO:0006139 nucleobase-containing compound metabolic process 9.46% (7/74) 2.21 0.000787 0.004617
GO:0008152 metabolic process 31.08% (23/74) 0.9 0.00162 0.009261
GO:0003676 nucleic acid binding 13.51% (10/74) 1.57 0.001843 0.010276
GO:0140101 catalytic activity, acting on a tRNA 4.05% (3/74) 3.62 0.001904 0.010354
GO:0015995 chlorophyll biosynthetic process 1.35% (1/74) 8.48 0.002809 0.013617
GO:0004418 hydroxymethylbilane synthase activity 1.35% (1/74) 8.48 0.002809 0.013617
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.35% (1/74) 8.48 0.002809 0.013617
GO:0004655 porphobilinogen synthase activity 1.35% (1/74) 8.48 0.002809 0.013617
GO:0016874 ligase activity 4.05% (3/74) 3.37 0.003076 0.014595
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 2.7% (2/74) 4.67 0.002806 0.014899
GO:0005488 binding 36.49% (27/74) 0.73 0.00321 0.014913
GO:0003674 molecular_function 55.41% (41/74) 0.5 0.003458 0.015739
GO:0006396 RNA processing 4.05% (3/74) 3.24 0.003992 0.017803
GO:0034645 cellular macromolecule biosynthetic process 6.76% (5/74) 2.22 0.004388 0.018123
GO:1901363 heterocyclic compound binding 24.32% (18/74) 0.94 0.004366 0.018371
GO:0097159 organic cyclic compound binding 24.32% (18/74) 0.94 0.004366 0.018371
GO:0003723 RNA binding 5.41% (4/74) 2.6 0.004358 0.019057
GO:0006520 cellular amino acid metabolic process 4.05% (3/74) 3.11 0.005172 0.020971
GO:0070567 cytidylyltransferase activity 1.35% (1/74) 7.48 0.00561 0.021947
GO:0004853 uroporphyrinogen decarboxylase activity 1.35% (1/74) 7.48 0.00561 0.021947
GO:0009059 macromolecule biosynthetic process 6.76% (5/74) 2.09 0.006393 0.02458
GO:0051540 metal cluster binding 2.7% (2/74) 4.02 0.006822 0.025355
GO:0051536 iron-sulfur cluster binding 2.7% (2/74) 4.02 0.006822 0.025355
GO:0071705 nitrogen compound transport 4.05% (3/74) 2.9 0.007663 0.028013
GO:0008150 biological_process 37.84% (28/74) 0.62 0.007971 0.028669
GO:0015994 chlorophyll metabolic process 1.35% (1/74) 6.48 0.011189 0.039604
GO:0032296 double-stranded RNA-specific ribonuclease activity 1.35% (1/74) 6.15 0.013966 0.047189
GO:0046148 pigment biosynthetic process 1.35% (1/74) 6.15 0.013966 0.047189
GO:0004525 ribonuclease III activity 1.35% (1/74) 6.15 0.013966 0.047189
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.054 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.043 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.068 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.051 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.111 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_186 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_214 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_225 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_227 0.035 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_239 0.04 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_244 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_248 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.08 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_166 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.039 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.062 Archaeplastida Compare
Gingko biloba HCCA Cluster_177 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_209 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.071 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_265 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.06 Archaeplastida Compare
Zea mays HCCA Cluster_65 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.054 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.063 Archaeplastida Compare
Zea mays HCCA Cluster_268 0.095 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.075 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.089 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_41 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.043 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_123 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.078 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.042 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.097 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.07 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_129 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_266 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_53 0.031 Archaeplastida Compare
Picea abies HCCA Cluster_88 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_227 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_266 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.042 Archaeplastida Compare
Picea abies HCCA Cluster_341 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_354 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_362 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.056 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.109 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.049 Archaeplastida Compare
Oryza sativa HCCA Cluster_188 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_100 0.043 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.111 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.046 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.045 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.107 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.05 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.068 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_92 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.05 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_119 0.021 Archaeplastida Compare
Sequences (74) (download table)

InterPro Domains

GO Terms

Family Terms