Coexpression cluster: Cluster_56 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097159 organic cyclic compound binding 38.6% (44/114) 2.05 0.0 0.0
GO:1901363 heterocyclic compound binding 38.6% (44/114) 2.05 0.0 0.0
GO:0005488 binding 48.25% (55/114) 1.62 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 12.28% (14/114) 4.35 0.0 0.0
GO:0003674 molecular_function 59.65% (68/114) 1.11 0.0 0.0
GO:0003723 RNA binding 11.4% (13/114) 3.78 0.0 0.0
GO:0016874 ligase activity 8.77% (10/114) 4.45 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 7.89% (9/114) 4.75 0.0 0.0
GO:0003676 nucleic acid binding 19.3% (22/114) 2.44 0.0 0.0
GO:0016070 RNA metabolic process 11.4% (13/114) 3.27 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 6.14% (7/114) 5.14 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.14% (7/114) 5.14 0.0 0.0
GO:0005852 eukaryotic translation initiation factor 3 complex 3.51% (4/114) 7.28 0.0 0.0
GO:0006520 cellular amino acid metabolic process 7.02% (8/114) 4.15 0.0 0.0
GO:0003743 translation initiation factor activity 4.39% (5/114) 5.8 0.0 0.0
GO:0043039 tRNA aminoacylation 5.26% (6/114) 4.96 0.0 0.0
GO:0043038 amino acid activation 5.26% (6/114) 4.96 0.0 0.0
GO:0097659 nucleic acid-templated transcription 5.26% (6/114) 4.74 0.0 1e-06
GO:0006351 transcription, DNA-templated 5.26% (6/114) 4.74 0.0 1e-06
GO:0006082 organic acid metabolic process 7.89% (9/114) 3.54 0.0 1e-06
GO:0043436 oxoacid metabolic process 7.89% (9/114) 3.54 0.0 1e-06
GO:0019752 carboxylic acid metabolic process 7.89% (9/114) 3.56 0.0 1e-06
GO:0090304 nucleic acid metabolic process 11.4% (13/114) 2.67 0.0 1e-06
GO:0008135 translation factor activity, RNA binding 4.39% (5/114) 5.21 0.0 2e-06
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.39% (5/114) 5.14 0.0 2e-06
GO:0034062 5'-3' RNA polymerase activity 4.39% (5/114) 5.08 0.0 3e-06
GO:0097747 RNA polymerase activity 4.39% (5/114) 5.08 0.0 3e-06
GO:0036094 small molecule binding 20.18% (23/114) 1.73 0.0 3e-06
GO:0006139 nucleobase-containing compound metabolic process 13.16% (15/114) 2.19 1e-06 8e-06
GO:0032774 RNA biosynthetic process 5.26% (6/114) 4.14 1e-06 9e-06
GO:1901265 nucleoside phosphate binding 18.42% (21/114) 1.67 2e-06 1.5e-05
GO:0000166 nucleotide binding 18.42% (21/114) 1.67 2e-06 1.5e-05
GO:0016779 nucleotidyltransferase activity 5.26% (6/114) 3.96 2e-06 1.7e-05
GO:0006399 tRNA metabolic process 5.26% (6/114) 3.96 2e-06 1.7e-05
GO:0043168 anion binding 18.42% (21/114) 1.66 2e-06 1.7e-05
GO:0006725 cellular aromatic compound metabolic process 13.16% (15/114) 2.06 3e-06 2e-05
GO:0046483 heterocycle metabolic process 13.16% (15/114) 2.06 3e-06 2e-05
GO:1901360 organic cyclic compound metabolic process 13.16% (15/114) 2.02 4e-06 2.6e-05
GO:0044281 small molecule metabolic process 9.65% (11/114) 2.44 6e-06 3.8e-05
GO:0035639 purine ribonucleoside triphosphate binding 16.67% (19/114) 1.68 6e-06 4e-05
GO:0032555 purine ribonucleotide binding 16.67% (19/114) 1.67 7e-06 4.1e-05
GO:0017076 purine nucleotide binding 16.67% (19/114) 1.67 7e-06 4.2e-05
GO:0034641 cellular nitrogen compound metabolic process 14.04% (16/114) 1.86 8e-06 4.6e-05
GO:0032553 ribonucleotide binding 16.67% (19/114) 1.65 8e-06 4.7e-05
GO:0097367 carbohydrate derivative binding 16.67% (19/114) 1.65 9e-06 4.8e-05
GO:0034660 ncRNA metabolic process 5.26% (6/114) 3.54 1.3e-05 6.8e-05
GO:0006418 tRNA aminoacylation for protein translation 3.51% (4/114) 4.76 1.3e-05 6.8e-05
GO:0000049 tRNA binding 2.63% (3/114) 5.87 1.4e-05 7.3e-05
GO:0009058 biosynthetic process 11.4% (13/114) 1.88 5.4e-05 0.00027
GO:0032549 ribonucleoside binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0032561 guanyl ribonucleotide binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0001882 nucleoside binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0001883 purine nucleoside binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0032550 purine ribonucleoside binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0005525 GTP binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0019001 guanyl nucleotide binding 5.26% (6/114) 3.1 7.3e-05 0.000316
GO:0034654 nucleobase-containing compound biosynthetic process 7.02% (8/114) 2.52 8e-05 0.00034
GO:0043167 ion binding 19.3% (22/114) 1.29 7.1e-05 0.000352
GO:1901576 organic substance biosynthetic process 10.53% (12/114) 1.88 0.000102 0.000428
GO:0005737 cytoplasm 3.51% (4/114) 3.96 0.000124 0.00047
GO:0046451 diaminopimelate metabolic process 1.75% (2/114) 6.7 0.000122 0.000472
GO:0006553 lysine metabolic process 1.75% (2/114) 6.7 0.000122 0.000472
GO:0009089 lysine biosynthetic process via diaminopimelate 1.75% (2/114) 6.7 0.000122 0.000472
GO:0043648 dicarboxylic acid metabolic process 1.75% (2/114) 6.7 0.000122 0.000472
GO:0009085 lysine biosynthetic process 1.75% (2/114) 6.7 0.000122 0.000472
GO:0003824 catalytic activity 28.07% (32/114) 0.9 0.000247 0.000925
GO:0019438 aromatic compound biosynthetic process 7.02% (8/114) 2.28 0.000255 0.00094
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.63% (3/114) 4.54 0.000272 0.000988
GO:0044249 cellular biosynthetic process 9.65% (11/114) 1.81 0.000306 0.00108
GO:0018130 heterocycle biosynthetic process 7.02% (8/114) 2.24 0.000306 0.001094
GO:1901362 organic cyclic compound biosynthetic process 7.02% (8/114) 2.18 0.000401 0.001397
GO:0008144 drug binding 13.16% (15/114) 1.43 0.00042 0.001439
GO:0009067 aspartate family amino acid biosynthetic process 1.75% (2/114) 5.7 0.000604 0.002043
GO:0009066 aspartate family amino acid metabolic process 1.75% (2/114) 5.47 0.000842 0.002772
GO:0044271 cellular nitrogen compound biosynthetic process 7.89% (9/114) 1.87 0.000834 0.002784
GO:0034645 cellular macromolecule biosynthetic process 5.26% (6/114) 2.34 0.001246 0.00405
GO:0052689 carboxylic ester hydrolase activity 1.75% (2/114) 4.96 0.001781 0.005713
GO:0009059 macromolecule biosynthetic process 5.26% (6/114) 2.2 0.001997 0.006324
GO:0006413 translational initiation 1.75% (2/114) 4.82 0.002168 0.006777
GO:0005524 ATP binding 11.4% (13/114) 1.31 0.002231 0.00689
GO:0032559 adenyl ribonucleotide binding 11.4% (13/114) 1.3 0.002328 0.0071
GO:0030554 adenyl nucleotide binding 11.4% (13/114) 1.3 0.002404 0.00724
GO:0017111 nucleoside-triphosphatase activity 5.26% (6/114) 2.12 0.002661 0.007918
GO:0016887 ATPase activity 3.51% (4/114) 2.71 0.003285 0.009547
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.26% (6/114) 2.05 0.00333 0.009565
GO:0016462 pyrophosphatase activity 5.26% (6/114) 2.06 0.003258 0.009581
GO:0016817 hydrolase activity, acting on acid anhydrides 5.26% (6/114) 2.05 0.003403 0.009663
GO:0005515 protein binding 10.53% (12/114) 1.3 0.003547 0.009955
GO:0008152 metabolic process 22.81% (26/114) 0.77 0.003873 0.010749
GO:0044237 cellular metabolic process 17.54% (20/114) 0.9 0.004641 0.012738
GO:0016053 organic acid biosynthetic process 2.63% (3/114) 2.98 0.006469 0.014794
GO:0046394 carboxylic acid biosynthetic process 2.63% (3/114) 2.98 0.006469 0.014794
GO:0003883 CTP synthase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0008837 diaminopimelate epimerase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0004814 arginine-tRNA ligase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0006220 pyrimidine nucleotide metabolic process 0.88% (1/114) 7.28 0.006426 0.014973
GO:0004019 adenylosuccinate synthase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0006420 arginyl-tRNA aminoacylation 0.88% (1/114) 7.28 0.006426 0.014973
GO:0031369 translation initiation factor binding 0.88% (1/114) 7.28 0.006426 0.014973
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 0.88% (1/114) 7.28 0.006426 0.014973
GO:0006221 pyrimidine nucleotide biosynthetic process 0.88% (1/114) 7.28 0.006426 0.014973
GO:0047661 amino-acid racemase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0004592 pantoate-beta-alanine ligase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0004826 phenylalanine-tRNA ligase activity 0.88% (1/114) 7.28 0.006426 0.014973
GO:0043631 RNA polyadenylation 0.88% (1/114) 7.28 0.006426 0.014973
GO:0036361 racemase activity, acting on amino acids and derivatives 0.88% (1/114) 7.28 0.006426 0.014973
GO:0005849 mRNA cleavage factor complex 0.88% (1/114) 7.28 0.006426 0.014973
GO:0006378 mRNA polyadenylation 0.88% (1/114) 7.28 0.006426 0.014973
GO:1901607 alpha-amino acid biosynthetic process 1.75% (2/114) 3.89 0.007936 0.017984
GO:0009987 cellular process 18.42% (21/114) 0.75 0.011283 0.025336
GO:1901605 alpha-amino acid metabolic process 1.75% (2/114) 3.58 0.012029 0.026766
GO:0030261 chromosome condensation 0.88% (1/114) 6.28 0.012811 0.027278
GO:0015939 pantothenate metabolic process 0.88% (1/114) 6.28 0.012811 0.027278
GO:0015940 pantothenate biosynthetic process 0.88% (1/114) 6.28 0.012811 0.027278
GO:0006323 DNA packaging 0.88% (1/114) 6.28 0.012811 0.027278
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.88% (1/114) 6.28 0.012811 0.027278
GO:0050662 coenzyme binding 3.51% (4/114) 2.11 0.013964 0.029229
GO:0008652 cellular amino acid biosynthetic process 1.75% (2/114) 3.47 0.013874 0.02929
GO:0071704 organic substance metabolic process 17.54% (20/114) 0.74 0.015073 0.031286
GO:0006807 nitrogen compound metabolic process 15.79% (18/114) 0.78 0.016249 0.033445
GO:0008150 biological_process 26.32% (30/114) 0.55 0.016529 0.033741
GO:0070279 vitamin B6 binding 1.75% (2/114) 3.28 0.017905 0.035955
GO:0030170 pyridoxal phosphate binding 1.75% (2/114) 3.28 0.017905 0.035955
GO:0031124 mRNA 3'-end processing 0.88% (1/114) 5.7 0.019155 0.036963
GO:0003729 mRNA binding 0.88% (1/114) 5.7 0.019155 0.036963
GO:0016854 racemase and epimerase activity 0.88% (1/114) 5.7 0.019155 0.036963
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 0.88% (1/114) 5.7 0.019155 0.036963
GO:0004045 aminoacyl-tRNA hydrolase activity 0.88% (1/114) 5.7 0.019155 0.036963
GO:0044283 small molecule biosynthetic process 2.63% (3/114) 2.39 0.019678 0.037388
GO:0044238 primary metabolic process 16.67% (19/114) 0.72 0.019629 0.037584
GO:1901566 organonitrogen compound biosynthetic process 4.39% (5/114) 1.68 0.020033 0.037773
GO:0006814 sodium ion transport 0.88% (1/114) 5.28 0.025459 0.046927
GO:0070569 uridylyltransferase activity 0.88% (1/114) 5.28 0.025459 0.046927
GO:0031123 RNA 3'-end processing 0.88% (1/114) 5.28 0.025459 0.046927
GO:0019842 vitamin binding 1.75% (2/114) 3.0 0.025983 0.04754
GO:0048037 cofactor binding 4.39% (5/114) 1.58 0.026296 0.047757
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.049 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.075 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.04 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_194 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_146 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_233 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_88 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_91 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.037 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_133 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.03 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_337 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_4 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.056 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_168 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_195 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_243 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_270 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_13 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.053 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_36 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_115 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_133 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_175 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_16 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.069 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_272 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_399 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_408 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_41 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_42 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.074 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.055 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.04 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_93 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.044 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_219 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_223 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_242 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_34 0.019 Archaeplastida Compare
Sequences (114) (download table)

InterPro Domains

GO Terms

Family Terms