Coexpression cluster: Cluster_60 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 21.15% (22/104) 2.57 0.0 0.0
GO:0005634 nucleus 9.62% (10/104) 4.09 0.0 0.0
GO:0043226 organelle 13.46% (14/104) 3.22 0.0 0.0
GO:0043229 intracellular organelle 13.46% (14/104) 3.23 0.0 0.0
GO:0006364 rRNA processing 5.77% (6/104) 5.75 0.0 0.0
GO:0016072 rRNA metabolic process 5.77% (6/104) 5.75 0.0 0.0
GO:0043227 membrane-bounded organelle 9.62% (10/104) 3.78 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 9.62% (10/104) 3.78 0.0 0.0
GO:0005730 nucleolus 3.85% (4/104) 7.09 0.0 0.0
GO:0034470 ncRNA processing 6.73% (7/104) 4.58 0.0 0.0
GO:0016070 RNA metabolic process 10.58% (11/104) 3.16 0.0 1e-06
GO:0006396 RNA processing 7.69% (8/104) 3.8 0.0 1e-06
GO:0022613 ribonucleoprotein complex biogenesis 3.85% (4/104) 5.95 0.0 4e-06
GO:0042254 ribosome biogenesis 3.85% (4/104) 5.95 0.0 4e-06
GO:0034660 ncRNA metabolic process 6.73% (7/104) 3.9 0.0 4e-06
GO:0044085 cellular component biogenesis 3.85% (4/104) 5.83 1e-06 5e-06
GO:0005488 binding 35.58% (37/104) 1.18 1e-06 5e-06
GO:1901363 heterocyclic compound binding 25.96% (27/104) 1.47 1e-06 6e-06
GO:0097159 organic cyclic compound binding 25.96% (27/104) 1.47 1e-06 6e-06
GO:0090304 nucleic acid metabolic process 10.58% (11/104) 2.57 3e-06 2e-05
GO:0044424 intracellular part 14.42% (15/104) 2.07 3e-06 2e-05
GO:0044464 cell part 14.42% (15/104) 1.98 5e-06 3.9e-05
GO:0044428 nuclear part 4.81% (5/104) 4.18 8e-06 5.3e-05
GO:0006139 nucleobase-containing compound metabolic process 10.58% (11/104) 1.87 0.000206 0.00133
GO:0046483 heterocycle metabolic process 10.58% (11/104) 1.74 0.000448 0.002672
GO:0006725 cellular aromatic compound metabolic process 10.58% (11/104) 1.75 0.000435 0.002696
GO:1901360 organic cyclic compound metabolic process 10.58% (11/104) 1.71 0.000543 0.003115
GO:0000166 nucleotide binding 14.42% (15/104) 1.32 0.000906 0.004842
GO:1901265 nucleoside phosphate binding 14.42% (15/104) 1.32 0.000906 0.004842
GO:0032555 purine ribonucleotide binding 13.46% (14/104) 1.36 0.001037 0.005024
GO:0017076 purine nucleotide binding 13.46% (14/104) 1.36 0.00107 0.005024
GO:0043168 anion binding 14.42% (15/104) 1.3 0.001019 0.005096
GO:0035639 purine ribonucleoside triphosphate binding 13.46% (14/104) 1.37 0.000995 0.005141
GO:0032553 ribonucleotide binding 13.46% (14/104) 1.35 0.001161 0.005291
GO:0097367 carbohydrate derivative binding 13.46% (14/104) 1.34 0.001221 0.005407
GO:0036094 small molecule binding 14.42% (15/104) 1.25 0.001487 0.006404
GO:0003674 molecular_function 41.35% (43/104) 0.58 0.0017 0.007124
GO:0034641 cellular nitrogen compound metabolic process 10.58% (11/104) 1.45 0.002328 0.009254
GO:0005575 cellular_component 15.38% (16/104) 1.14 0.002289 0.009338
GO:0032549 ribonucleoside binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0019001 guanyl nucleotide binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0032550 purine ribonucleoside binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0001882 nucleoside binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0001883 purine nucleoside binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0032561 guanyl ribonucleotide binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0005525 GTP binding 3.85% (4/104) 2.65 0.003871 0.012766
GO:0008168 methyltransferase activity 3.85% (4/104) 2.7 0.003386 0.01312
GO:0071840 cellular component organization or biogenesis 3.85% (4/104) 2.62 0.00413 0.013338
GO:0016741 transferase activity, transferring one-carbon groups 3.85% (4/104) 2.59 0.004401 0.013922
GO:0005515 protein binding 10.58% (11/104) 1.3 0.004949 0.015341
GO:0034457 Mpp10 complex 0.96% (1/104) 7.41 0.005862 0.016226
GO:0090501 RNA phosphodiester bond hydrolysis 0.96% (1/104) 7.41 0.005862 0.016226
GO:0044452 nucleolar part 0.96% (1/104) 7.41 0.005862 0.016226
GO:0000469 cleavage involved in rRNA processing 0.96% (1/104) 7.41 0.005862 0.016226
GO:0005732 small nucleolar ribonucleoprotein complex 0.96% (1/104) 7.41 0.005862 0.016226
GO:0090305 nucleic acid phosphodiester bond hydrolysis 0.96% (1/104) 7.41 0.005862 0.016226
GO:0043228 non-membrane-bounded organelle 3.85% (4/104) 2.38 0.007394 0.019425
GO:0043232 intracellular non-membrane-bounded organelle 3.85% (4/104) 2.38 0.007394 0.019425
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.92% (2/104) 3.95 0.007283 0.019806
GO:0097747 RNA polymerase activity 1.92% (2/104) 3.89 0.007947 0.020192
GO:0034062 5'-3' RNA polymerase activity 1.92% (2/104) 3.89 0.007947 0.020192
GO:0030490 maturation of SSU-rRNA 0.96% (1/104) 6.41 0.01169 0.028312
GO:0030515 snoRNA binding 0.96% (1/104) 6.41 0.01169 0.028312
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.96% (1/104) 6.41 0.01169 0.028312
GO:0044446 intracellular organelle part 4.81% (5/104) 1.84 0.013313 0.031746
GO:0044422 organelle part 4.81% (5/104) 1.82 0.013758 0.032311
GO:0043167 ion binding 14.42% (15/104) 0.87 0.01614 0.037338
GO:0097659 nucleic acid-templated transcription 1.92% (2/104) 3.29 0.017857 0.040113
GO:0006351 transcription, DNA-templated 1.92% (2/104) 3.29 0.017857 0.040113
GO:0005524 ATP binding 9.62% (10/104) 1.06 0.021369 0.047317
GO:0032559 adenyl ribonucleotide binding 9.62% (10/104) 1.06 0.022019 0.048069
GO:0030554 adenyl nucleotide binding 9.62% (10/104) 1.05 0.022516 0.048471
GO:0008134 transcription factor binding 0.96% (1/104) 5.41 0.023245 0.048689
GO:0032040 small-subunit processome 0.96% (1/104) 5.41 0.023245 0.048689
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.051 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.133 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.055 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_262 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_246 0.032 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.102 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.043 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_71 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.028 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.049 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.034 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.048 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.058 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_309 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_318 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_338 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.078 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.086 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.115 Archaeplastida Compare
Zea mays HCCA Cluster_350 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.078 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.106 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_87 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.194 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_176 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.071 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_290 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_364 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.061 Archaeplastida Compare
Picea abies HCCA Cluster_434 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_451 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_49 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.146 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.041 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.043 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.032 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.056 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_82 0.062 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.056 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_199 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.096 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.161 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.108 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.071 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.075 Archaeplastida Compare
Vitis vinifera HCCA Cluster_233 0.025 Archaeplastida Compare
Sequences (104) (download table)

InterPro Domains

GO Terms

Family Terms