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Heatmap: Cluster_125 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - - - - - - 3.96 - - - - - - - - - - - - 3.38 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
2.95 - - - - - - - - - - - 3.65 - - - - 2.51 - - - - - - - -
0.72 0.38 0.14 0.15 - 0.27 - 0.35 -0.88 - -0.93 0.81 - 0.09 -0.12 0.73 - 2.07 1.1 - - 1.86 - - -1.54 0.63
-1.69 -1.4 - -2.46 0.23 0.06 -0.53 -2.65 -0.95 -0.3 - -2.45 - - -2.79 - -2.57 2.07 2.01 0.6 -0.51 1.18 -2.2 - 2.48 0.78
0.42 -1.76 -2.64 -0.98 -0.58 -0.96 - 0.6 -1.66 -1.73 - -1.55 -0.8 -0.08 -1.73 -1.02 - 3.11 1.43 1.4 1.33 -3.04 -3.02 -2.04 -1.71 -1.11
-0.58 -0.96 -0.73 -0.56 -0.36 -0.18 0.36 0.23 0.33 0.48 0.06 -0.38 -1.0 0.13 0.1 0.62 -0.61 1.8 0.56 0.61 -1.25 -2.05 0.25 -0.19 -2.04 -0.59
-0.99 -0.94 -0.73 -0.77 -0.44 -0.0 -0.37 -0.49 0.37 0.09 -0.01 0.0 -0.64 -0.22 0.22 -0.05 -0.22 1.0 0.57 -0.12 -0.14 0.02 0.47 0.66 -0.35 0.72
-0.9 -0.79 -1.91 -3.95 0.71 0.25 0.88 -0.52 -0.06 -1.49 -2.96 -0.57 -0.01 1.08 0.6 0.42 -1.68 0.85 1.54 -0.12 - 1.79 -4.57 0.08 -0.82 -4.48
- - - - - - - - - - - - - - - - - 3.47 - - 2.0 - - 3.45 - -
-7.23 -5.97 -6.92 - -4.95 -5.91 -4.38 -5.19 -4.85 -3.43 -3.26 -3.65 -5.73 -2.35 -2.97 -4.21 -1.92 4.43 -0.57 -2.96 0.43 -4.48 -0.38 -2.23 -4.58 -3.82
-1.8 -2.67 -2.94 -2.42 -1.88 -1.74 -1.98 -2.53 -1.82 -1.42 -1.92 -2.09 -2.52 -0.09 -0.48 -1.01 -0.08 2.36 1.62 0.96 -1.73 0.49 -0.34 0.29 -0.06 2.32
-0.7 - - 0.77 0.97 -0.5 -0.52 - - -1.75 -0.67 - -1.74 - 0.76 -0.04 -1.4 2.56 1.34 0.11 0.37 0.35 -1.14 - 0.04 1.31
- - - - - - - - - - - - - 1.38 0.89 0.43 1.61 1.16 2.1 0.67 - 0.19 1.64 1.74 -1.17 0.02
- - 0.56 - - - - - - - - - - - 0.48 0.71 - 2.27 2.36 - 0.6 - 1.9 1.17 -0.05 1.62
0.4 -3.2 0.13 -2.7 -0.22 -2.76 0.27 -0.85 -0.37 -1.86 -2.81 - -0.06 -0.72 0.82 -2.63 - 1.33 2.09 -0.13 -0.51 -0.0 1.67 0.92 - 0.48
-0.33 - - 0.05 - - - - - - - 0.06 - 0.93 1.46 - - 3.12 2.87 0.59 -0.02 - - - - -
1.01 1.2 - - -0.98 - - - -0.7 - 0.28 - 0.71 -0.34 0.76 - -0.71 3.23 1.98 - -1.12 - - - -1.3 -1.19
- - - - - 1.56 - - - - - - - - 1.22 - - 1.67 2.67 - 0.32 - 2.23 - - 2.39
-2.08 -2.53 -2.78 -2.82 - -1.76 -1.33 -1.75 - -1.82 -1.22 -0.68 - -2.94 -0.15 -1.88 -0.43 3.01 0.86 1.78 -0.12 - 2.28 0.62 - -1.7
- -1.3 - - -2.53 -1.08 - -1.51 -2.74 -1.77 -0.95 -1.63 -2.33 -2.89 -1.01 -1.79 -1.09 2.67 1.01 1.85 0.79 -1.98 2.07 1.54 - -0.59
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - -0.57 0.23 - -2.47 4.52 -0.78 - -2.83 - -2.82 - - -3.02
- - - - - - - - - 3.5 - - - - - - - 3.87 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-1.93 -1.98 -1.05 -0.08 0.52 0.91 0.68 0.49 0.26 0.08 -0.1 -0.6 -1.95 -1.34 0.25 -1.12 -1.3 1.57 1.11 0.34 -2.87 0.19 -0.32 -1.63 0.57 -0.14
- - - - 1.02 0.33 - - - - - 1.99 - 0.73 0.23 - 1.53 2.27 2.14 - - - - 0.21 -0.36 0.89
-0.83 -1.22 -1.4 -1.15 -0.15 0.52 1.1 1.09 0.79 0.56 0.33 -0.15 -0.78 -1.19 -0.97 -1.43 0.18 1.47 0.35 0.36 -1.82 -1.6 -0.24 -0.02 -0.35 -0.67
3.06 - - - - - - - - - - - - - - - - 3.62 - - 2.43 - - - - -
0.32 - 0.62 - - - - 2.3 - - - - - 0.04 0.37 - 1.85 -0.12 0.62 - 0.18 0.83 2.58 - 0.01 -
- - - - - - - - - - - - - - - - - - - - - - - - - -
-1.2 -2.63 -5.69 -3.02 -1.49 -2.65 -2.32 -1.51 -0.97 -0.83 -0.03 -0.12 -0.24 0.55 0.15 -0.21 -1.63 0.89 1.7 1.67 0.8 0.6 -0.42 1.59 -0.41 -0.87
- 1.33 - - - - - 0.08 - - - - - - -0.22 - 3.23 3.4 -0.14 -0.45 - - - - - -
0.01 - - -0.05 - - 1.91 -0.1 - -0.24 -0.19 - -0.23 -0.71 - - - 1.14 2.18 - - -0.38 1.33 - - 2.61
- - -0.85 -2.36 -2.74 - -2.23 - -2.31 - - -0.76 - -1.48 0.63 - 0.53 3.42 -2.79 -0.44 1.76 -2.69 1.87 -0.33 -1.53 -0.36
- - 0.31 0.77 0.78 -0.8 - - -0.76 - - - - 0.54 - - -0.61 3.85 0.12 -0.13 -0.5 - - -0.91 - -1.31
- - - - - - 0.43 0.11 - -0.89 - 0.32 - 0.57 0.62 -0.79 2.83 2.05 1.78 - -0.71 - 0.43 - -0.42 -0.35
- - - - - - - - - - - - - - 2.66 - - 3.74 - 1.67 - - - 1.65 - -
-1.17 -2.82 -1.92 -1.86 -1.59 -1.4 -0.74 -0.46 -0.26 1.34 1.37 1.08 -0.52 -1.23 0.96 -3.79 1.07 2.11 0.2 0.26 -4.31 -2.73 -0.69 -0.44 -0.96 -0.35
-1.63 - -1.32 1.87 1.31 0.69 0.69 0.24 -0.26 1.74 1.47 1.09 -1.43 - - - -1.12 0.74 - -1.7 - -0.04 0.02 -0.72 - -1.9
-0.96 -2.31 -0.58 -3.02 -1.13 -1.47 -0.13 -2.01 -1.09 -1.58 -0.97 -1.69 -1.09 0.52 -0.14 -0.72 -1.33 3.74 0.42 -1.45 -5.09 -2.91 -0.26 -0.56 -3.15 -2.33
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - 3.6 - - - - - - - - - - - 3.8 - - - - - - -
- -3.3 - - - - - - - -4.49 -4.48 -4.33 - -0.34 0.95 -0.39 -0.65 2.79 1.8 0.63 0.52 -0.04 1.13 1.13 -1.18 1.31
-0.49 -0.12 0.47 0.69 -0.12 -0.86 -1.58 -0.52 -1.23 -0.39 -0.27 -0.18 -0.73 -5.2 -2.61 -0.03 -3.24 2.57 -0.52 0.5 -3.12 -3.74 -0.71 -0.21 1.39 0.79
- - - - - - - - - - - - - 0.02 -1.62 0.2 - 3.79 1.59 - 0.86 -0.03 -0.88 - 0.59 0.9
- - - - - - - - - 1.05 - 1.19 - - 1.01 - 1.07 2.9 - - - 1.31 - 2.92 - -
- 0.85 - - - 1.52 - - - - - - - - 2.77 1.16 - 3.62 - - - - - - - -
0.08 - - - - - - - -0.62 - - -0.52 -0.18 - 1.26 - -0.64 3.42 -0.97 1.86 -1.55 - 1.66 - -0.23 -1.19
-0.46 - 1.14 -0.37 - -0.43 0.0 - - -0.53 - 0.64 - -1.03 - - -0.22 1.82 1.78 -0.82 0.99 2.68 - - -1.06 -0.95
- - - - - - - - - - - - - - - - - 3.66 - - - - 3.74 - - -
- - - - - - - - - - - - - 2.34 2.68 - - - - - - - 3.27 - - 2.29
1.17 -0.47 0.68 1.32 -0.22 -1.03 -0.35 -0.68 -0.18 -1.15 0.66 -0.97 0.18 -0.69 -0.56 -0.84 -2.16 0.88 0.64 -2.15 -2.04 1.23 -3.77 -3.49 0.8 0.51
-2.73 -0.8 -0.68 -0.51 -0.31 -0.32 -0.45 -1.8 -1.62 -0.56 -0.52 -0.94 -2.63 - -0.66 - 0.04 2.53 2.05 0.15 -0.46 1.46 -4.15 -2.23 1.04 -1.16
0.85 0.18 -0.14 -1.38 -2.86 -2.14 -2.84 -0.46 -0.51 0.12 1.24 0.05 0.82 -2.63 -0.37 - -2.07 0.05 1.58 0.32 -0.71 -1.03 1.2 -0.94 0.85 0.48
-1.74 - - -2.52 -2.69 - -2.59 - -2.61 -2.71 -0.64 -2.48 - 1.4 -1.1 -0.51 0.1 2.56 -0.62 -0.11 1.9 - 2.23 0.11 -2.24 0.98
-0.17 -0.68 -0.45 -0.2 -0.23 -0.09 -0.36 -0.59 0.37 0.0 -0.22 -0.19 -0.77 -0.04 -0.13 0.21 -0.33 1.35 0.45 -0.47 0.23 0.7 -0.31 -0.13 0.41 -0.49
- - - - - - - - - - - - - - - 0.15 0.36 2.0 0.09 - 2.19 -0.23 -0.5 3.35 -0.51 0.59
-4.86 -1.15 -0.28 0.29 0.79 0.83 0.74 0.66 1.16 0.91 0.38 -0.01 -3.8 -1.73 -1.34 -1.13 -0.23 1.08 0.34 -0.03 -1.4 -1.16 -0.02 0.08 -0.99 -1.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.