Heatmap: Cluster_77 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Egg cell
Ovule
Uninucleate microspore (Col-0)
Uninucleate microspore (Ler-0)
Pollen (bicellular, Col-0)
Pollen (late bicellular, Col-0)
Pollen (bicellular, Ler-0)
Pollen (tricellular, Col-0)
Pollen (tricellular, Ler-0)
Pollen (mature, Col-0)
Pollen (mature, Ler-0)
Sperm
Pollen tube (Col-0)
Flower (receptacles)
Flower (floral buds)
Flower (sepals)
Flower (petals)
Flower (stamen filaments)
Flower (anthers)
Flower (carpels)
Flower (stigmatic tissue)
Pedicel
Axis of the inflorescence
Silique
Silique (senescent)
Pods of siliques
Pods of siliques (senescent)
Embryo
Endosperm
Seed
Seed (young)
Seed (germinating)
Seedling
Seedling (etiolated)
Meristem
Stem (internode)
Stem (internode, senescent)
Stems
Leaf (rosette)
Epidermis cells
Mature guard cells
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root (apex)
Root (stele)
Root (QC cells)
Root (tip)
2.7 4.06 - - -1.34 - - - - - - - - -0.6 -0.39 -3.7 - - -4.0 2.81 - -1.41 - -6.97 - -4.59 - - -2.91 - 3.66 - -3.06 - -3.79 -2.45 - -2.74 - - - -1.46 -0.4 -1.79 -0.37 - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.12 3.88 - -3.39 - - - - - - - - - - 0.01 - - - 0.13 3.1 -3.74 - -3.31 -5.72 - - - -3.26 -3.79 - 3.69 -3.73 - -5.43 -7.22 - - -5.5 -4.87 - - - -3.29 -2.71 -3.28 - - -4.51
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.13 4.01 - - - - - -2.51 - - - - -3.94 -3.76 -0.02 -5.7 - - -5.29 3.0 -4.37 - - -5.15 - -3.87 -2.23 - -4.06 -7.45 4.14 -7.32 - - -7.38 - - -6.75 - - - - - - - - - -
2.12 2.91 2.21 1.83 2.29 - 0.93 - -0.08 - - - 2.26 -0.21 1.32 - - - -2.36 1.99 - - - - - - - - 0.56 - 2.25 - -3.16 - -4.71 - -0.64 -3.8 -2.25 - - - -0.69 - - - - -
1.77 1.88 3.63 3.29 2.38 -1.52 2.18 - - - -2.74 - - -3.41 0.96 - -2.77 - -2.55 1.51 - - - - - - - - - -4.47 1.68 - - - - - - - - - - - - - - - - -
3.76 -4.16 - -3.42 -2.99 -3.87 - - - - - -5.06 - -4.64 - - -1.56 -2.85 -4.33 -2.7 -0.74 - - -5.5 - -5.43 -2.26 -3.27 -3.1 - - -3.5 - -0.62 - 1.37 0.04 -2.11 -0.94 1.93 - 1.52 -1.72 - -0.72 -1.96 4.28 -
3.89 3.69 - -1.29 -1.02 0.55 -2.64 -0.37 -2.61 -3.86 - 0.29 -2.98 -2.1 1.11 -3.2 - - -3.83 2.14 -2.64 - - -5.47 - -4.32 - -2.16 -3.54 - 2.92 -3.82 - - - - - -2.23 - - - - - - - - - -
3.01 3.6 -2.04 - -0.65 0.03 - -0.41 - -3.15 - - - -0.96 3.6 - - - -1.54 2.24 - - - -6.07 - - - - -1.41 - 2.73 - -2.83 - -3.77 - - -3.43 - - - - - - - - - -
3.4 3.82 - - - - -2.03 - - - - - - -0.05 0.0 - - - - 1.48 - - - 0.08 - -2.19 -1.44 - 0.44 - 3.85 -3.68 -5.13 -0.89 -7.02 - - -1.6 - - - - - - - - - -
3.02 3.18 - - - - - - - - - - - 1.52 0.3 -3.37 -1.49 0.82 -3.12 2.06 - - - 0.37 -1.62 -0.72 - -0.65 1.21 -2.62 3.22 -3.18 -1.18 - -0.16 0.97 - -0.87 -3.75 - - - - -0.68 -0.26 - - -3.36
1.97 3.43 -2.95 -3.85 -3.25 -5.31 -3.34 -8.08 - -9.26 - - -8.39 -0.03 0.52 -0.97 -0.77 -1.53 -4.98 2.13 -2.33 -3.08 -3.25 -0.33 - 0.28 -2.98 -7.42 -5.33 - 3.72 -2.64 -1.87 -0.41 -3.41 -0.41 -1.02 -0.19 -2.93 -4.34 - 1.75 -0.1 -3.69 -0.3 - - -4.7
1.96 1.8 1.58 0.41 0.28 -4.17 -0.05 -7.49 - -7.66 -6.28 - -3.9 0.69 -1.21 -0.46 -0.54 -0.23 -1.34 1.5 -0.32 -0.47 0.49 -0.1 -1.89 -0.52 -4.41 1.3 -0.34 -1.54 1.37 -0.35 -0.89 -0.7 1.01 -0.42 -0.72 0.45 -0.77 -2.13 - -0.59 -0.2 1.45 -0.59 0.46 -0.93 0.13
2.53 3.29 2.06 0.24 -0.39 -2.11 -0.47 - - -2.57 - -4.62 - 0.16 1.69 -3.8 -0.48 - 0.64 1.86 - - -3.71 1.9 - -1.32 -2.23 - 0.15 -5.63 3.22 -6.2 - - -6.09 - - - - - - - - - - - - -
2.53 4.06 -0.71 - - - - -2.63 - - - - -1.65 -2.34 - - - - -4.0 2.43 - - - 0.74 - -1.0 - - 3.32 - 2.72 - - - -6.06 - - -5.3 - - - - - - - - - -
3.85 3.5 - - - - - - - - - - - -1.73 0.58 - - - -3.1 2.78 -1.62 - - - - -3.58 -1.61 - - - 3.6 -3.13 -3.89 -2.72 - - - -3.11 -3.17 - - - - - - - - -
3.21 4.02 - - - - - - - - - - - -2.59 1.92 - - - - 2.94 - - - - - - - - -3.7 - 3.44 - - - -6.0 - - - - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
AT2G31030 (ORP1B)
2.19 4.08 - 0.39 - - - - - - - - 0.03 -2.94 2.88 -3.45 - - -2.22 3.04 - - - - - - - - -1.49 - 2.41 - -1.22 -1.77 - - -1.99 -4.88 -4.3 - -1.82 -0.11 -2.01 - - - - -
AT2G33130 (RALF18)
2.96 2.36 -3.25 -2.35 -4.82 - -2.06 - - -3.79 - 2.79 2.21 0.33 1.67 -5.6 - - -4.47 0.88 - - - -1.22 -4.62 -3.85 -0.57 - 0.41 -4.14 3.59 -6.05 -4.31 -1.81 -6.39 - -1.45 -5.19 -0.14 - - -1.78 - - - - - -
2.6 2.51 -4.05 -2.99 -4.64 -6.19 -3.13 - -8.44 -9.59 - -9.0 -8.92 0.12 0.64 -0.53 -3.51 -3.5 -3.36 1.7 -0.19 -1.33 -1.72 1.95 -3.47 1.04 -4.3 -3.05 1.0 -5.52 2.59 -0.74 0.49 1.05 -1.19 1.74 0.04 0.47 -1.71 -4.28 -2.26 0.39 -0.82 -5.4 -1.25 -5.06 - -6.36
0.81 3.11 - 2.91 - - 1.8 - 0.24 - - 2.3 1.31 - - - - - - 2.72 - - - -3.35 - - - - 1.23 - 3.17 - - - - - - - - - - - - - - - - -
3.22 2.89 - - - - - - - - - -1.33 -2.64 -1.59 1.45 - 0.92 - -2.05 2.1 - - - 0.58 0.69 -0.58 - - 3.19 0.87 1.34 0.91 -3.35 -1.41 - -1.94 -2.11 -3.82 -4.67 - - - -0.29 - - - - -3.03
0.9 2.69 -0.44 -1.55 -0.07 0.08 -0.44 -1.18 -0.75 -1.39 -1.15 - -0.76 0.79 0.73 0.04 -1.31 -0.89 -1.73 1.58 -0.25 -0.08 0.86 -0.7 -3.6 -0.29 -1.58 0.95 -0.99 -1.89 1.58 -0.79 0.4 0.67 -0.18 -0.75 -0.67 0.24 -0.21 -0.85 -0.57 -1.02 -0.94 1.19 -1.25 - -9.77 0.02
1.66 1.08 -0.59 -0.33 -0.57 -0.21 0.27 -3.27 -3.95 - -5.23 -2.86 - -0.19 -0.95 0.38 0.95 0.31 -0.19 1.11 0.93 -0.28 -0.98 0.34 -0.69 0.51 0.07 0.42 -0.31 -0.66 1.59 0.36 -0.02 0.0 0.49 -1.38 -0.5 0.06 -0.19 -5.15 - -1.87 0.1 0.73 0.49 1.52 - -0.11
1.42 3.74 -3.54 -3.37 -1.45 - - -3.88 - - - 2.92 -3.19 0.24 1.32 -4.58 -2.42 -3.8 -3.18 2.78 - - - -2.92 - -4.45 - - 0.95 - 3.4 - -4.4 - - - - -6.9 - - - - - - - - - -4.35
0.98 4.16 - - - - - - - - - - - -1.34 2.8 - - - - 2.93 -3.72 - - -0.43 - - - - - - 3.62 - - - - - - - - -3.32 - - - - - - - -
0.31 3.22 - - - -6.65 - -6.92 - -9.9 -8.74 - -6.55 0.9 -0.32 2.36 -6.78 -5.1 -0.63 2.3 -0.65 0.32 -3.68 -0.42 -4.7 -0.0 -0.96 - -8.42 - 2.91 -1.11 1.09 0.05 -4.34 -1.52 -3.12 -0.94 1.21 -1.06 2.26 - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
AT3G23140 (URO)
3.36 4.24 - - -4.78 - - - - -5.52 - - -4.88 -2.94 1.35 -5.42 - - -4.3 3.28 -4.54 - - -9.69 - - - - -5.56 - 2.65 - - - -8.16 - - -8.72 - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.6 2.31 - - - - - 3.32 2.09 0.14 - - - - 1.35 - - - 1.62 1.69 0.02 - - - - - - - - - 2.48 - - - -3.01 - - -4.26 - - - - - - - - - -
AT3G46613 (RTFL4)
2.88 1.6 - - - -0.41 -1.42 -0.03 0.92 - -1.61 0.93 - 0.01 -0.44 -2.76 -1.71 -0.25 - 1.86 - - 0.11 - - - - -1.4 - - 0.16 2.15 - -3.28 -1.83 -0.51 - -3.61 - - - - 0.89 1.74 3.22 - - 1.0
3.95 3.36 - - - - - - - - - -3.78 - -4.52 2.47 - - - - 2.82 -3.42 - - -2.12 - -2.85 -2.94 - -3.4 - 3.14 - - - - - - -7.64 - - - - - - - - - -
2.44 4.3 - -1.56 - - -2.0 - -3.6 - -3.79 -2.95 - -1.25 0.65 -0.53 - - -0.66 3.05 - - - -5.74 - -4.32 - - -2.57 - 3.04 - -2.68 -3.6 -0.06 - - -3.46 -4.92 - -1.8 -2.23 - - - - -3.7 -
AT3G61640 (AGP20)
2.38 0.76 1.13 0.63 1.5 1.63 0.89 -0.58 -2.27 -3.41 -3.23 -2.9 0.84 -0.89 -2.41 0.01 0.5 0.57 -1.73 0.25 -0.71 -1.21 -0.31 0.32 -5.82 -0.36 -2.46 -0.42 -1.15 -7.28 -0.91 -1.64 -0.44 0.15 -0.47 1.16 0.97 -0.1 0.1 -2.87 -6.22 -1.42 0.1 -0.19 -0.2 -0.89 -0.42 -0.06
AT4G16295 (SPH1)
4.24 3.74 - - - - - 1.72 - - - - - - - - - - - 2.15 - - - 1.08 - 1.12 - - 0.56 - 1.14 - - - - - - - - - - - - - - - - -
2.08 4.34 - - - - - - - - - - - -2.06 2.09 - - - -3.35 2.2 - - - -1.4 - -1.31 - - 1.88 - 3.28 - - - - - - - - - - - - - - - -2.73 -
3.23 3.54 - - - - - - - - -8.23 -6.49 - -0.13 -0.52 -6.37 -4.23 -0.82 -4.62 2.35 -2.79 -5.78 -7.12 0.29 -5.77 -2.83 -4.23 -5.75 -1.85 -8.99 4.12 - -6.05 -6.09 -2.74 - -6.77 -3.42 -6.68 - - - - - -8.1 - - -
3.66 1.16 - -4.53 -5.65 -5.94 - - - - - - - -0.19 0.55 -0.32 -1.49 -1.22 -3.04 2.36 -2.86 -0.9 -0.07 -0.91 -4.89 -1.83 -3.69 1.85 -1.88 -5.09 0.23 -0.77 -0.24 -1.14 1.33 0.14 -1.53 0.64 0.7 -2.94 - -0.76 0.21 2.11 -0.77 - - -1.17
3.86 3.08 - - - - - - - - - - - - 0.63 - - - - 2.23 - - - 0.7 - 0.07 - -0.32 0.31 - 3.78 - - - -1.48 - - - - - - - - - - - - -
0.3 3.3 - - - - - - - - - -2.74 - 0.78 1.22 -1.86 1.07 0.75 -0.78 2.39 -1.21 -2.28 - -1.33 - -2.94 1.43 - -3.23 - 3.08 -1.91 -1.56 -3.61 1.78 - 1.03 0.28 - - - 0.73 - - -1.76 -0.42 -1.54 -
5.44 - - - - - - - - - - - - 1.97 - - - - - - - - - - - - - - - - - - - - - - - -0.84 - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.55 4.37 - - -1.12 - - - - - - -0.89 -0.51 -0.83 1.26 - - - -4.16 2.98 - - - - - - - - -3.96 - 3.04 - - - - -2.6 - -6.69 - - - - -1.55 - - - - -
2.33 2.72 -5.02 -3.7 -7.49 - -3.5 - -8.33 -9.6 - -8.12 -4.26 -0.28 -0.16 -4.81 -3.45 -3.28 0.88 2.02 0.59 -7.13 -6.93 1.41 -5.45 -0.49 -2.53 -5.03 3.34 -8.7 3.59 -3.49 -5.77 -5.29 -5.52 -1.69 -5.98 -1.09 -9.06 - - -6.96 -5.29 - -7.86 - -5.63 -6.99
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.18 3.69 - - - - - -2.89 - - - - - - - - - - - 3.2 - - - -3.83 - -5.54 - - - - 4.4 - - - - - - - - - - - - - - - - -
4.46 3.27 - - - - -0.72 -0.96 1.46 -3.09 0.21 - - -3.04 1.19 - - - -2.99 2.17 -1.7 - - - - - - - - - 1.92 - - - -5.25 - - - - - - - - - - - - -
2.69 1.6 -4.79 - -3.35 - - -2.5 - -4.43 - 1.76 -1.95 0.21 -0.0 -0.3 -2.02 -0.17 -0.87 1.71 0.19 0.32 1.73 -0.61 -3.42 -1.14 -1.06 1.26 0.45 -4.05 0.5 -0.67 -0.94 -0.92 1.15 0.11 -2.17 0.49 -0.21 0.63 -0.99 0.69 -2.06 0.32 -1.12 - -2.45 -0.5
4.69 - - - - - - - - - - 4.48 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
4.86 - - - - - - - - - - 4.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.29 4.14 - - - - - -0.78 -0.6 -2.37 -1.95 1.01 -0.12 - 2.39 - - - -3.46 2.38 - - - -3.06 - -2.98 - - -1.3 - 2.28 - - - - - - - - - - - - - - - - -
- 3.21 - - - - - - - - - - - 2.05 - - - - - 3.45 - - 2.72 - - - - - 0.4 - 3.89 - - - - - - -1.76 -0.65 - - - - - - - - -
5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.96 4.01 -5.31 - -4.65 - -6.87 - - - -5.1 - -6.03 -0.52 1.21 - -6.99 - -5.31 2.84 -4.6 -6.86 - -4.62 - -6.15 - - -8.09 -4.29 3.7 -5.08 -5.83 -6.03 -3.88 - - -0.89 -10.21 - - - - - - - - -
4.55 -0.13 -1.54 -3.72 0.4 0.29 -3.65 -4.94 - -5.03 - - -1.93 -1.03 -0.81 -1.22 -0.45 -1.93 -1.14 0.7 -2.63 -1.92 -0.49 0.87 - 0.6 - -0.99 -0.29 - -0.31 -2.96 -2.9 -1.7 -0.36 -0.04 -4.58 -1.14 -2.2 -2.27 - -0.11 -1.16 -4.02 -0.35 - 1.87 -4.81
2.01 2.7 -0.24 -0.42 -0.26 -3.26 -0.65 - - -6.95 -6.56 - - 1.02 -0.61 -0.64 -0.27 0.49 -0.24 1.89 -1.65 0.53 1.58 -0.29 -6.89 -1.08 - -1.4 -2.89 -7.99 2.61 -1.76 -1.0 -1.27 0.98 1.29 -2.31 0.32 -3.56 -6.32 - -0.31 0.05 -0.07 -0.06 - -9.64 -0.84

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.