- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -5.06 | -2.17 | - | - | - | - | - | -2.91 | -0.47 | 2.03 | - | - | - | - | - | - | - | - | 1.68 | - | -1.8 | -2.22 | -3.38 | - | - | -1.98 | - | - | - | - | 0.81 | 0.56 | 0.96 | 1.19 | 0.25 | 0.58 | 0.07 | 1.49 | 0.63 | 2.14 | 1.35 | 0.52 | -6.14 | - | - | -2.68 | -2.1 | 1.17 | 0.44 | 2.14 | -0.4 | 1.28 | -0.05 | 1.49 | 2.81 | -1.08 | |
| -1.46 | -0.95 | -4.58 | -9.06 | - | - | -6.6 | -0.34 | 1.08 | 1.08 | - | -6.81 | - | -6.75 | - | - | - | - | 1.11 | -5.41 | -1.4 | -1.95 | -2.63 | - | -7.76 | -2.42 | - | - | -7.84 | - | 0.82 | -0.21 | 0.68 | 1.09 | -0.03 | 0.33 | -0.05 | 0.87 | 0.3 | 1.69 | 1.33 | -0.24 | -5.19 | -5.82 | -5.47 | -2.04 | -1.95 | 1.36 | 0.76 | 2.29 | -0.3 | 1.23 | 0.35 | 2.21 | 3.1 | -1.81 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.