- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.54 | -1.12 | -1.6 | -0.31 | -1.09 | -0.66 | 0.05 | -0.84 | -0.29 | -1.72 | -3.14 | -2.38 | -1.32 | -1.61 | -2.15 | 0.5 | - | 0.54 | -1.45 | -0.2 | -1.1 | -0.5 | -1.05 | -0.6 | -0.62 | 0.38 | -0.66 | 0.14 | 0.1 | -0.02 | 0.72 | 0.48 | 0.61 | 0.55 | 0.49 | 0.56 | 0.72 | 0.21 | 0.39 | 0.32 | 0.52 | 0.34 | -0.41 | -0.18 | 0.5 | -0.63 | -0.73 | 0.3 | 0.34 | 0.69 | 1.15 | 1.18 | 0.98 | 0.97 | 0.78 | -0.05 | |
| 0.12 | 0.38 | -1.57 | -0.97 | -1.22 | -2.8 | -1.28 | -0.18 | -0.69 | -1.35 | -1.61 | -0.77 | -0.76 | -1.26 | -0.74 | -2.58 | - | -3.76 | -1.43 | -1.19 | -1.27 | 0.03 | -1.27 | -0.46 | 0.05 | -0.06 | -2.27 | -1.53 | -1.25 | -0.5 | 0.4 | 0.79 | 0.43 | 0.74 | 0.25 | 0.72 | 0.33 | 0.95 | 0.63 | 0.59 | 0.46 | 0.23 | 0.03 | 0.25 | 0.06 | -0.85 | -0.92 | 0.08 | 0.05 | 1.23 | 1.06 | 1.69 | 1.27 | 1.3 | 1.25 | 0.05 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.