- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -2.01 | -3.12 | - | - | - | - | - | -2.87 | -3.77 | -3.52 | -0.88 | -0.66 | -0.4 | -1.24 | -0.83 | - | - | - | -3.1 | - | - | -2.97 | - | - | - | -1.6 | - | - | - | -3.07 | 1.62 | 1.92 | 2.23 | 2.24 | 1.76 | 1.73 | 2.49 | 2.45 | 2.28 | 1.78 | 1.5 | 1.35 | -4.12 | -3.37 | -2.42 | -2.99 | - | -2.99 | -3.42 | -1.82 | -0.79 | -1.14 | -0.33 | -0.55 | -1.56 | -2.66 | |
| -1.15 | - | - | - | - | - | - | - | -3.84 | -3.03 | -2.06 | -5.84 | 0.45 | - | -2.3 | - | - | - | -3.03 | - | - | - | - | -1.18 | - | -4.6 | - | - | - | - | 1.23 | 2.36 | 2.09 | 1.93 | 2.09 | 2.17 | 2.32 | 2.34 | 2.36 | 1.74 | 2.49 | 1.76 | - | - | - | - | - | -2.07 | - | - | - | -2.03 | -2.37 | -2.25 | -2.05 | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.