- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.78 | -1.19 | 0.49 | 0.1 | 0.59 | 0.42 | 1.01 | -0.81 | -1.36 | -2.94 | -0.41 | -1.55 | -0.99 | -0.67 | -1.59 | 0.85 | 4.7 | 0.89 | -2.98 | -1.56 | -1.23 | -0.56 | -0.77 | -1.79 | -1.76 | -1.19 | -1.49 | -1.54 | -1.71 | -1.53 | -1.38 | -1.99 | -1.64 | -1.75 | -1.89 | -1.65 | -1.76 | -1.97 | -1.72 | -1.78 | -1.56 | -2.31 | -1.64 | -2.02 | -1.52 | -0.95 | -0.56 | -1.67 | -1.65 | -0.87 | -0.84 | -0.85 | -1.19 | -1.23 | -0.67 | -1.26 | |
| -5.02 | -3.55 | 0.8 | 0.09 | 1.33 | 0.14 | -1.54 | -4.3 | -2.75 | -6.66 | -1.71 | -1.63 | -1.17 | -1.28 | -1.89 | -2.07 | 5.38 | -1.78 | -10.41 | -4.18 | -4.73 | -3.41 | -4.27 | -5.85 | -4.9 | -2.91 | -4.16 | -4.85 | -5.66 | -4.08 | -10.0 | - | - | -8.42 | - | - | - | - | - | - | - | - | -6.78 | -9.77 | -6.34 | -3.96 | -3.74 | -7.24 | -7.12 | -0.08 | -0.39 | -1.1 | -1.04 | -0.53 | -1.36 | -1.14 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.