- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.45 | -0.88 | -4.08 | -1.91 | -4.57 | - | - | -0.75 | -0.0 | -0.21 | -0.14 | -0.46 | -0.02 | -1.05 | -0.48 | -3.18 | - | - | -0.15 | -0.78 | -0.47 | -2.12 | 0.05 | -0.01 | -0.85 | -0.03 | 0.32 | 0.36 | -0.07 | 0.19 | 0.95 | 0.58 | 0.76 | 1.06 | 0.99 | 0.82 | 0.64 | 1.05 | 1.24 | 0.83 | 1.22 | 0.1 | 0.09 | -0.01 | 0.89 | -0.19 | -1.59 | -0.55 | -0.22 | 0.11 | 0.37 | 0.35 | 0.41 | -0.01 | 0.12 | 0.89 | |
| -0.53 | 0.68 | -3.59 | -3.19 | - | - | - | -0.01 | -0.98 | -0.22 | -1.57 | -0.71 | -0.15 | -0.92 | -1.01 | - | - | -5.0 | 0.13 | -0.07 | 0.0 | -0.63 | 0.41 | 0.58 | 1.18 | -0.27 | 0.95 | 0.97 | 0.88 | 0.74 | 0.59 | 0.3 | 0.54 | 0.72 | 0.56 | 0.14 | 0.3 | 0.72 | 0.7 | 0.49 | 0.81 | -0.13 | 0.07 | -0.19 | 0.61 | 0.63 | -0.89 | -0.81 | -0.53 | -0.17 | 0.12 | 0.03 | 0.11 | -0.48 | 0.08 | 0.64 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.