- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.54 | -0.52 | -1.13 | -0.95 | -1.07 | -1.07 | -1.05 | -1.2 | -0.95 | 2.28 | 0.22 | -0.35 | 0.47 | 0.13 | -0.77 | -1.43 | -0.19 | -1.65 | 1.98 | 0.65 | -0.45 | 0.3 | -0.35 | -0.04 | 0.19 | 0.11 | 0.5 | 0.78 | 0.53 | 0.66 | -0.08 | -0.47 | -0.26 | -0.2 | -0.28 | 0.0 | -0.1 | -0.33 | -0.31 | -0.84 | 0.06 | -0.42 | -0.47 | -0.51 | 0.66 | -0.33 | -0.33 | -0.36 | -0.28 | -0.21 | -0.14 | 0.02 | -0.11 | -0.35 | -0.1 | -1.02 | |
| -1.01 | -0.18 | -2.3 | -1.44 | -1.48 | -2.84 | -3.11 | -0.02 | -1.01 | 2.56 | 0.93 | 0.28 | 0.33 | 0.24 | -0.24 | -2.06 | - | -4.64 | 2.62 | -0.05 | -0.84 | -1.41 | -0.42 | -0.93 | -0.29 | -0.01 | -0.18 | -0.19 | -0.4 | -0.35 | -0.71 | -1.12 | -0.88 | -0.56 | -1.05 | -0.97 | -0.63 | -0.8 | -0.85 | -0.88 | -0.72 | -1.44 | 0.02 | -0.94 | -0.16 | 0.05 | -1.05 | -0.52 | -0.52 | 1.11 | 0.9 | 0.92 | 0.46 | 0.71 | 1.62 | 0.01 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.