- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -4.2 | 1.71 | 3.76 | 2.54 | -1.46 | 2.73 | -3.09 | 2.64 | - | - | 3.5 | 1.07 | 0.72 | -0.68 | -2.65 | -1.98 | - | - | -4.54 | -5.72 | -0.68 | -0.18 | -0.92 | - | -3.57 | -1.92 | - | - | -5.91 | -5.82 | - | - | - | - | - | - | -6.69 | - | - | - | - | -6.78 | - | - | - | -0.41 | -1.7 | - | -9.2 | - | -5.71 | -6.7 | - | - | -4.88 | -2.17 | |
| -2.02 | 3.53 | 2.08 | 2.2 | 0.28 | 1.53 | 0.91 | 1.1 | -2.79 | -3.54 | 1.39 | -0.46 | -0.18 | -0.49 | -0.91 | -0.47 | - | -0.52 | -3.2 | -1.34 | 0.43 | -0.23 | 0.43 | -0.98 | -1.14 | -1.69 | -1.17 | -1.51 | -1.33 | -1.25 | -1.26 | -1.63 | -1.02 | -0.64 | -0.69 | -1.04 | -1.83 | -0.09 | -0.56 | -0.51 | -1.36 | -0.94 | -2.26 | -3.48 | -4.75 | -0.52 | 0.16 | -1.76 | -1.54 | -1.23 | 0.33 | -0.82 | -2.2 | -2.28 | 0.16 | -2.68 | |
| -1.32 | 2.9 | 2.14 | 1.94 | -0.06 | 0.32 | 0.27 | 1.46 | -2.58 | -6.95 | 2.32 | 0.64 | 0.45 | 0.58 | -0.0 | -0.85 | - | -0.65 | -4.97 | -0.69 | 0.53 | -0.36 | 0.33 | -1.54 | -1.0 | -1.04 | -0.16 | -0.97 | -1.25 | -1.13 | -1.82 | -2.7 | -1.12 | -0.64 | -0.72 | -1.21 | -3.02 | -0.28 | -0.84 | -0.63 | -1.74 | -1.32 | -5.56 | -5.71 | - | -0.74 | 0.12 | -3.85 | -3.86 | -0.42 | 1.24 | -0.38 | -1.54 | -1.81 | 1.12 | -2.02 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.