- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.37 | 0.59 | -1.62 | 0.13 | -2.13 | -1.5 | -2.14 | -0.18 | 0.03 | 2.17 | -1.5 | -1.06 | -0.43 | 0.75 | -0.39 | -1.21 | - | 0.01 | 2.71 | -0.31 | -0.27 | -1.32 | -0.26 | 0.1 | -0.39 | -2.08 | 1.02 | 0.82 | 0.52 | 0.7 | -0.68 | -0.14 | -0.61 | -0.64 | -0.75 | -0.95 | -1.15 | -1.1 | -0.69 | -0.9 | -1.25 | -1.3 | 1.13 | 0.57 | 1.02 | -0.07 | -1.13 | -1.53 | -1.37 | -0.28 | 0.4 | -0.26 | -0.87 | -0.46 | 0.51 | -0.09 | |
| 0.09 | 0.15 | -5.53 | -5.01 | - | -5.75 | - | -0.38 | -0.44 | 1.68 | -3.22 | -1.18 | 0.11 | 0.46 | -0.39 | - | - | -5.4 | 2.92 | -0.65 | -0.4 | -1.42 | -0.54 | 0.17 | -0.05 | -1.32 | 0.17 | 0.99 | 0.94 | 1.15 | 0.1 | 0.53 | 0.4 | 0.12 | 0.23 | -0.18 | -0.38 | 0.0 | -0.0 | 0.13 | -0.41 | -0.48 | 0.51 | 0.49 | 0.39 | -0.05 | -0.77 | -2.79 | -2.83 | -0.1 | 0.36 | -0.31 | -0.9 | -0.14 | 0.83 | -0.06 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.