- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | - | - | - | - | - | - | - | - | 0.54 | -0.29 | -0.44 | 3.11 | -0.65 | -2.44 | - | - | - | 3.09 | - | - | - | - | - | - | -5.81 | - | - | - | - | 0.33 | -0.22 | 1.69 | -0.89 | 0.5 | 0.52 | -1.16 | -0.42 | 1.68 | 1.33 | -1.01 | -0.2 | 2.29 | 1.97 | 0.74 | -1.06 | - | 1.92 | 1.73 | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | -1.18 | -0.37 | -1.61 | 0.34 | 0.51 | 0.28 | - | - | - | 2.56 | - | - | - | - | - | - | -4.0 | - | - | - | - | 1.01 | 0.67 | 0.5 | 0.59 | 0.76 | -1.67 | 0.32 | 1.49 | 1.81 | 1.65 | 0.01 | -0.92 | 2.74 | 1.84 | 0.43 | - | -0.72 | 2.57 | 2.44 | - | - | -1.84 | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.