- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | - | - | - | - | - | - | - | -6.7 | - | - | - | - | -3.92 | - | - | - | - | -2.19 | - | - | - | - | - | - | -4.76 | - | - | - | - | 2.1 | 0.09 | 2.87 | 1.1 | 2.28 | 2.06 | 2.7 | 2.88 | 0.77 | 1.14 | 0.55 | 3.5 | - | - | - | - | - | -1.03 | -0.59 | - | -3.52 | - | - | - | - | - | |
| -1.0 | 1.69 | - | - | - | - | - | - | - | -3.43 | - | -1.7 | 1.71 | - | -0.54 | - | - | - | -2.88 | - | - | - | - | - | - | - | - | - | - | - | 1.85 | 2.21 | 2.14 | 2.54 | 0.66 | 2.19 | 1.85 | 2.06 | 2.5 | 1.4 | - | 1.8 | - | - | - | - | - | - | - | -1.22 | -1.08 | -0.36 | -0.63 | -0.53 | -0.89 | -3.45 | |
| - | - | - | - | - | - | - | - | - | -3.7 | - | -5.16 | - | - | - | - | - | - | -3.03 | - | -4.34 | - | - | - | - | -6.09 | - | - | - | - | 1.4 | 1.75 | 2.86 | 2.54 | 2.24 | 0.27 | 2.21 | 2.32 | 2.61 | 1.94 | 1.73 | 2.72 | -0.47 | -1.1 | - | -5.21 | - | -6.34 | -6.03 | - | - | - | - | - | - | - | |
| 0.98 | - | - | - | - | - | - | - | -4.06 | - | -0.56 | - | 1.28 | - | - | - | - | - | -0.27 | - | - | - | - | - | - | -2.49 | - | - | - | - | 2.48 | 1.35 | 2.46 | 3.02 | 1.32 | 1.41 | 1.18 | 2.77 | 1.64 | 1.85 | 0.52 | 1.82 | - | - | - | -0.01 | - | - | - | - | -0.05 | - | - | - | - | -2.04 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.