- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.58 | -0.95 | 2.23 | 2.28 | -0.22 | 0.48 | - | 3.22 | -1.19 | 0.12 | - | 0.02 | -1.06 | - | 0.94 | -0.79 | - | -1.24 | 0.66 | -1.8 | 0.1 | -1.78 | 0.1 | -1.19 | -3.24 | -1.94 | -3.08 | -1.6 | -2.32 | -3.22 | -1.36 | -2.07 | -2.12 | -1.3 | -2.05 | -0.65 | -1.54 | -2.38 | -1.55 | -1.7 | -0.45 | -1.11 | -0.24 | 0.43 | 0.89 | -1.48 | -1.98 | -1.4 | -1.33 | 0.92 | 0.78 | 0.65 | 0.98 | 0.26 | 0.78 | 0.88 | |
| 0.09 | -1.02 | 2.44 | 2.21 | 1.46 | 0.64 | - | 3.73 | -0.94 | -1.04 | - | 0.68 | -0.64 | -3.32 | 1.47 | - | - | -2.0 | -0.64 | - | 1.18 | -2.83 | - | - | - | -2.8 | - | - | - | - | -4.07 | - | -1.83 | -1.66 | -3.05 | -1.85 | - | -2.13 | -1.89 | - | -1.3 | -1.86 | 0.35 | 0.52 | 1.76 | -2.68 | - | -0.86 | -1.15 | 0.4 | 0.33 | 0.12 | -1.4 | 0.54 | -0.19 | 0.43 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.