- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.45 | - | -0.54 | -0.64 | 0.09 | -1.85 | - | -1.34 | 0.2 | -1.69 | 0.92 | -0.1 | 0.99 | 0.36 | 0.11 | -0.67 | - | -1.21 | -2.46 | -0.77 | -2.36 | -2.06 | -0.04 | -0.3 | -0.53 | -0.39 | 0.44 | -0.67 | -1.61 | -0.71 | 0.13 | -0.33 | -0.3 | 0.03 | -0.0 | -0.63 | -1.04 | 0.16 | -0.44 | -0.08 | -0.39 | -0.84 | -0.29 | -0.3 | 0.41 | -0.55 | -0.95 | 0.36 | 0.51 | 1.25 | 1.65 | 1.77 | 1.18 | 1.35 | 1.5 | 0.76 | |
| -1.6 | -1.13 | -0.32 | 0.61 | -0.85 | -0.01 | - | -1.45 | -0.18 | -0.64 | 0.49 | 0.31 | 0.14 | 1.08 | 0.39 | -0.01 | - | -0.51 | -0.75 | -0.44 | -2.5 | -0.84 | -3.51 | -1.04 | -0.51 | 0.11 | -0.19 | -0.16 | -0.29 | 0.04 | -1.22 | -1.1 | -1.94 | -1.08 | -2.89 | -1.1 | -1.92 | -1.21 | -1.34 | -2.37 | -1.29 | -1.4 | 1.42 | 1.08 | 0.59 | -2.79 | -1.1 | 0.79 | 0.9 | 1.32 | 1.57 | 1.62 | 1.47 | 1.62 | 0.79 | 0.7 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.