- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.41 | -1.14 | -1.8 | -0.76 | -1.22 | -1.42 | -0.64 | -0.54 | 0.13 | 0.8 | -1.24 | -1.24 | -0.39 | -0.77 | -1.16 | -0.81 | - | -0.36 | 0.29 | -0.86 | -0.44 | -1.06 | -0.5 | -0.7 | -1.12 | 0.14 | -0.83 | -1.33 | -1.36 | -1.11 | 0.94 | 0.48 | 0.72 | 0.69 | 0.55 | 0.99 | 0.89 | 0.85 | 1.0 | 0.8 | 1.36 | 0.35 | 0.19 | -0.15 | 0.24 | -0.42 | -0.12 | -0.17 | -0.08 | 0.32 | 0.74 | 0.53 | -0.05 | -0.0 | 0.7 | 0.4 | |
| 0.33 | 0.37 | -2.98 | -1.6 | -2.46 | -2.2 | -2.99 | -0.28 | 0.16 | 0.81 | -2.59 | -1.7 | -0.85 | -1.59 | -1.2 | -3.17 | - | -1.9 | 0.43 | -0.81 | -0.61 | -0.06 | -0.23 | -0.64 | -0.63 | 0.53 | -0.48 | -1.15 | -1.17 | -1.14 | 1.07 | 1.15 | 1.01 | 1.09 | 1.05 | 0.91 | 1.18 | 1.08 | 1.21 | 0.79 | 1.0 | 0.71 | -0.72 | -1.32 | 0.88 | -0.16 | -0.82 | -0.24 | -0.11 | -0.35 | 0.17 | 0.2 | -0.41 | -0.57 | 0.39 | 0.08 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.