- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.86 | 0.75 | - | -0.62 | - | - | - | 2.15 | - | - | - | - | 2.49 | -1.55 | 0.7 | - | - | - | - | 1.11 | 2.54 | -1.06 | 1.95 | -0.17 | -0.22 | -0.48 | 0.94 | 2.16 | 2.02 | - | -2.15 | - | -1.13 | -1.05 | 0.3 | - | -1.07 | - | 0.1 | -0.42 | 0.08 | -1.02 | - | - | - | 1.24 | 0.04 | - | - | - | - | - | - | - | - | 1.67 | |
| 0.33 | - | - | 0.61 | - | - | - | 2.55 | - | - | 0.8 | -0.4 | 0.81 | - | -0.08 | - | - | - | - | 2.27 | 3.09 | -0.63 | 1.97 | 1.3 | 1.84 | -0.97 | 1.15 | 0.31 | 0.91 | 1.49 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.42 | -0.08 | - | - | -0.1 | 0.36 | -0.62 | -0.0 | -1.17 | -0.54 | 1.21 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.