Heatmap: Cluster_304 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- -2.55 3.75 0.64 4.93 1.55 0.96 1.27 -6.86 -5.03 - - - - - - -1.19 0.47 - - - - - - - -4.43 - - - - - - - - - - - - -3.61 - - - - -3.23 -2.83 -2.21 - - - - - - -2.44 - -2.33 -2.3
- - - - 3.88 - - - 1.3 -1.25 - 3.92 - - 1.73 1.05 - 3.77 -1.1 - 1.36 - - - - -3.63 - - - - - - 0.28 - - - - - - - - - - - - - - - - - - - - - - -
-0.41 -0.52 -0.3 -0.88 2.58 - - -0.27 -2.3 -2.91 1.75 2.45 2.95 2.11 2.78 - - -0.49 -1.13 - - -1.37 -0.32 - -0.49 0.02 - - - - -2.02 - - -1.32 - - - - - -1.05 - - - -2.36 - -0.28 -0.23 -0.59 -0.23 0.32 -1.24 0.2 0.56 -0.01 1.05 1.24
- - 1.76 2.28 4.14 1.96 - - - -0.93 - 2.92 3.93 - - 1.44 - - - - - - - - - -2.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 2.35 -1.72 5.29 2.97 - 1.22 - - - -0.5 - - -1.16 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 1.15 - 3.56 2.12 2.7 - -2.18 -0.43 - 1.89 0.26 4.18 2.22 - - - -1.14 - - - - - - -3.48 - - - - - - - - - - - - - - - - - - - - - - - - -0.03 0.01 - - - -
-8.02 -9.71 3.81 1.03 4.22 2.16 -0.81 0.2 -14.0 - 1.26 1.24 1.09 2.32 1.22 -3.06 -1.39 -3.18 - - -3.92 -5.5 - - - -3.75 - - - - -11.78 - - - - - - - - - - - -10.71 - - -8.05 -6.42 -6.33 -5.13 - - - - - - -11.99
-0.06 -2.15 2.61 0.24 3.76 2.22 1.1 1.29 -2.42 -2.29 0.7 0.89 0.98 1.59 0.98 0.49 - 1.33 -2.0 -4.44 -1.41 0.51 -2.53 - -4.29 1.31 -6.12 -6.23 -6.36 -4.27 -5.75 -4.82 -6.15 -4.58 -5.26 -5.24 -5.45 -6.43 -4.96 -4.05 -6.23 -6.23 -2.42 -2.76 -2.86 -0.14 0.67 -3.25 -1.23 -3.13 -2.64 -1.9 -4.09 -4.44 -2.42 -1.31
- - 2.3 1.41 4.5 - - 0.28 - - - 0.49 - -0.25 - - - - - - - - 1.29 - - -1.03 - - - - - - 0.34 0.29 - - 1.33 -0.07 - - - - 1.33 0.99 - - - - - 0.08 1.31 1.32 - - 0.3 0.73
- - - 3.3 4.32 - - - - -0.89 - - 0.93 -0.72 -0.46 3.48 - - -0.66 - - - - - - -0.74 - - - - - - - - - -0.37 - - 0.77 - -0.2 - - - - - - - - - -0.14 -0.19 0.55 1.16 -0.13 -1.61
- - 3.41 0.07 4.88 1.46 -1.09 -0.0 - - 0.95 0.5 0.54 1.43 0.43 -4.09 0.38 -4.15 -9.81 - -6.78 -2.75 - - - -4.81 - - - - - - - - - - - - - - - - - - - -3.92 -3.37 -8.25 -6.48 - - - - - - -
- - - - 1.76 - - - -0.79 - - 1.31 2.47 4.01 1.47 3.52 - - -2.9 - - - - - - -1.85 - - - - - - - - - - - - - - - - - - - - - -1.4 -2.49 0.86 0.09 1.69 0.56 1.31 0.78 -0.15
- - - - 3.56 - - - -3.4 - - 3.84 0.41 3.4 1.55 - 2.35 3.02 -1.84 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.03 - - -1.3
- - -1.02 0.9 4.05 1.85 - 0.58 -1.3 - 2.09 -1.85 0.73 3.46 0.05 - - 1.96 -2.44 -0.27 - -1.09 - - - -2.44 - -1.15 -1.28 -0.19 -2.07 - - - - -1.19 -2.06 -1.14 - -0.77 -0.91 -2.01 - -1.83 0.7 -1.9 - -1.48 -2.02 -2.11 - - -2.05 - - -3.71
- - - - 3.96 - - - - - - 3.06 4.07 - 2.65 - - - 1.24 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.75 - - - - -
- - - 2.42 3.64 - - - - 0.94 - 3.1 3.96 2.42 2.35 - - - 0.13 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.91
- - - - 5.48 2.64 - - - - - - - - - - - - - - - 2.18 - - - - - - - - - - - - - - - - - - - - - - - - - -0.42 - - - - - - - -
- - - - 5.39 - - - -2.19 0.66 - - - - - - - - - - - - - - - -2.38 - - - - - - - - - - 2.53 - - - - - - - - - - - - 1.05 1.09 - 1.09 - - -
-0.95 0.3 3.16 0.64 3.46 0.53 -1.2 1.45 -0.6 -0.47 0.51 0.05 0.3 -0.75 -0.33 -2.25 - -1.36 -0.89 -1.17 0.1 0.08 -0.66 0.46 -0.21 -0.96 -1.14 -0.7 -0.41 -0.4 -1.83 -1.53 -2.2 -2.27 -1.91 -1.52 -2.07 -1.55 -1.83 -2.05 -1.35 -2.2 -0.38 -0.78 -1.09 0.33 -0.16 -1.42 -1.06 -0.76 -0.41 -0.95 -1.63 -1.11 -0.82 -0.87
-4.51 - 4.0 1.13 4.22 2.0 -1.35 0.07 -10.23 - 1.1 1.24 1.17 1.85 0.98 -2.55 - -2.24 - - -1.54 -2.6 - - - -2.93 - - - - - - - - - - - - - - - - -8.91 - -8.22 -8.6 -2.63 -4.57 -3.57 - - - - - - -10.27
- - - - 5.13 2.08 - - - - - 1.88 1.86 - 1.48 - - - - - - - - - - -1.87 - - - - - - - - - - 2.68 - - - - - - - - - - - - - - - - - - -
- - - - 3.08 - - - -1.96 1.93 0.36 0.59 3.21 4.5 - - - - 1.37 - - - - - - -2.63 - - - - - - 0.37 - - - - - 0.19 - - - - - - - - - - 0.24 - 0.33 - 0.26 - -
- - 0.97 - 2.85 - 1.94 - - -1.65 - 3.07 1.76 3.9 1.72 2.64 - 1.78 -1.01 - - - - - - - - - - - -1.15 - - - - - - - - - - - - - - - 1.04 - - - - - - - - -
0.14 -0.55 2.83 2.32 3.87 -3.18 2.18 0.63 - - -0.87 0.15 1.21 0.67 0.15 -0.66 - 0.98 -5.97 0.16 1.24 -1.63 -0.61 -3.05 -0.52 -1.53 -0.62 -2.05 0.28 -1.09 - - - - - - - - - - - - - - - 0.47 -0.04 - - -2.04 -1.94 -4.05 -3.95 -3.13 -2.85 -0.94
- - - - 2.32 - - - - -0.44 0.44 1.7 2.34 2.38 - - - - -0.19 0.3 - - - - 3.68 - - 1.42 3.28 2.38 - - - - - - - - - - 0.55 - - - 0.45 - - - - - - - - - - -
- 2.35 - - 3.02 - - - -3.47 - - 2.65 3.01 4.56 2.15 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.64
-0.05 0.16 1.51 1.27 2.39 1.34 0.56 0.56 -0.89 -1.73 -0.61 -0.14 0.17 -0.87 -0.08 0.04 - 0.85 -1.48 0.01 0.38 1.27 0.06 0.31 0.2 0.0 -0.19 -0.13 -0.65 -0.34 -0.83 -0.93 -0.75 -0.85 -0.97 -0.91 -0.56 -1.0 -0.77 -0.98 -0.62 -0.85 -2.36 -2.61 -0.81 0.7 1.0 -0.53 -0.43 -0.8 -0.67 -0.56 -0.56 -0.58 -0.75 -0.31
- - - - 2.88 - - - - 1.08 - 2.86 3.58 0.55 3.46 - - 2.92 0.13 - - - - - - -3.4 - - - - - - - - - - - 0.99 - - - - - - 2.04 - - - - - - - - - - -
-1.97 0.06 3.18 1.6 4.05 1.98 0.64 0.45 -2.32 -5.19 -1.09 -0.96 0.53 0.11 -0.83 -0.56 - 0.3 -4.71 -1.85 -0.81 -2.02 0.5 -2.69 -0.99 -2.15 -0.88 -1.04 -1.23 -1.03 -1.55 -2.02 -1.79 -2.78 -2.56 -2.04 -2.16 -2.29 -1.3 -1.6 -1.77 -2.31 0.23 -0.57 -1.36 -0.39 -1.16 -3.46 -3.26 -3.06 -3.86 -3.81 -3.2 -4.23 -3.21 -1.86
- - - - 3.15 - - - - -0.4 - 4.07 - 3.01 2.96 3.2 - - -1.48 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -2.37 - 0.99 - 0.07 -0.12 - - -
- - - - 3.63 2.57 - - - - - - - 5.24 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-2.82 -0.6 3.07 -0.11 4.02 1.41 -3.41 0.24 -3.92 -9.32 2.17 1.96 1.75 2.34 1.71 -5.71 -2.11 -6.9 -8.82 -3.46 0.39 -2.59 -1.38 -5.52 -7.31 -3.61 -8.73 -6.52 - -7.29 -8.23 -7.4 -6.9 -7.22 -6.67 -8.95 -7.19 -9.03 -9.62 -5.94 -9.7 -7.4 -6.68 -4.63 -5.58 -0.7 -1.34 -0.04 0.05 -8.8 -7.47 -6.31 - -9.73 -4.51 -5.52
0.12 -0.32 1.8 -0.24 4.02 0.85 -0.98 1.06 -0.87 -1.26 - 0.28 -0.46 0.27 0.42 -1.86 - 0.04 -1.63 -2.4 -1.29 1.29 -0.29 -0.67 -2.24 1.1 -1.56 -2.99 -3.12 -3.44 -3.46 -2.24 -2.88 -3.21 -2.71 -2.69 -3.04 -4.61 -4.14 -3.5 -2.25 -3.87 -0.93 -0.97 -1.06 1.42 2.24 -0.52 -0.05 -1.97 -1.28 -0.86 -1.49 -1.77 -1.18 -1.88
- - - - 2.46 - - - -3.07 1.6 - 1.96 3.17 4.27 - - - - 0.62 - - - - - - -3.59 - - - - 0.08 - - - - - - - - 1.17 0.53 - -0.23 - 1.12 - 1.27 - - - 1.08 0.21 - - - -
-8.14 -9.25 3.18 0.01 3.94 1.77 1.69 -0.04 -6.61 -1.5 1.73 0.8 1.31 1.34 0.87 0.93 -2.68 2.95 -1.09 - -2.35 -7.49 -5.46 - - -8.94 - -9.16 -9.29 - -8.56 - -7.25 -6.35 -6.18 -7.09 -6.75 -8.38 -7.61 -7.79 -6.9 -6.73 -5.83 -8.26 -9.52 -7.13 -7.37 -6.59 -6.86 - -6.12 -6.49 -10.06 - -4.64 -11.66
- - - - 4.42 - - 0.17 - -1.53 - 1.27 - 4.94 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 3.24 - - 0.87 - 1.31 0.6 3.27 2.92 2.3 2.86 - - - 1.92 - - 0.72 - - - -0.66 - - 1.53 - -0.12 - - - 0.54 - - - - - - - - - - - - - - - - - - - - -
1.46 - 1.55 1.22 3.74 0.86 - -0.35 -4.04 - 1.81 2.13 1.81 3.27 2.54 0.23 - - - - - - - - - - - - - - - - - - - - - - - - - - -0.66 -1.08 - - - -3.07 -2.99 - -0.48 - -0.5 -0.66 - -0.96
-4.96 -3.48 1.11 -1.18 5.06 2.78 -1.7 -1.13 -7.03 - -0.87 0.2 -0.98 0.69 0.19 -1.36 - -0.23 - - -0.86 0.19 -2.05 - -4.03 -1.49 - - - - - - - - - - - - - - - - -7.03 - - 1.45 -0.13 -6.2 -5.32 - - - - -5.87 -3.0 -
- - 2.8 -0.74 5.23 2.53 - 1.61 - - - 0.97 - - - - - - - - - - - - - -5.26 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 0.61 1.97 3.55 - - - -3.24 1.49 0.67 2.36 3.54 1.21 - - - - -0.14 - - - - - - -1.69 - - - - - - - - - - - - - - - - 0.55 - - - - -0.08 -1.76 0.4 3.03 -2.52 0.7 - - -
- 1.66 - - 4.02 2.59 - - - -0.81 0.79 2.64 3.89 1.34 0.62 - - - 0.3 - - - - - - -2.32 - - - - - - - - - - - - - - - - - - - - - - - - 0.82 - - - - -
-0.12 -0.93 2.82 1.04 3.18 2.06 1.77 -0.23 -0.92 -2.67 0.75 0.11 0.24 0.99 -0.01 1.61 - 1.72 -2.71 -1.19 -1.36 0.25 -1.43 -1.49 -0.98 -0.7 -1.22 -1.26 -0.78 -0.91 -3.71 -4.57 -3.44 -3.84 -3.73 -4.0 -4.1 -3.86 -3.76 -3.95 -3.02 -3.72 -0.88 -0.84 -1.83 -0.11 -0.17 -1.04 -1.36 -1.47 -1.07 -1.21 -1.08 -1.41 -1.17 -1.05
1.17 - 0.69 1.56 1.98 1.18 -1.34 0.29 - - -0.88 0.66 3.4 3.29 1.76 2.17 - 0.09 -4.0 - 1.49 -2.34 2.14 - - 0.93 - - - - - - - - - - - - - - - - - - - -2.4 -1.24 - - - - - - - - -
-1.53 0.43 2.72 -2.03 3.65 1.8 -0.71 -0.63 0.71 1.37 -0.84 -0.27 -0.72 0.95 -0.11 0.57 - -0.46 1.15 -3.38 -0.15 0.49 -4.61 -2.4 - -1.5 - -4.72 -3.86 -4.76 -2.75 -3.76 -4.06 -5.3 - -3.51 -4.27 -2.46 -2.13 -2.93 -4.0 - -2.81 -2.5 -1.51 1.9 0.9 -1.95 -1.6 -0.23 -0.82 -1.32 -0.89 -0.64 0.68 0.04
- - - - 3.43 - - - - -0.46 - 3.35 2.97 3.74 2.11 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.24 - 0.1 1.53 0.48 - - 1.16 -
- - 0.67 1.18 3.21 - - - -2.86 0.26 3.22 0.85 3.54 3.86 1.02 - - - 0.15 - - - - - - - - - - - - - - - - - -0.58 - - - - - - - - - - - - - - - - - - -0.94
-2.75 -1.76 3.16 -0.05 3.77 1.6 0.57 -1.65 -0.93 0.88 0.64 0.07 -0.01 0.7 0.36 -0.64 - 0.03 0.77 -4.99 -1.07 -0.13 - -1.58 -5.63 -1.66 - - - - -3.28 -4.95 -3.93 -4.27 -2.9 -4.01 -5.59 -3.25 -3.14 -3.14 -2.26 -3.39 -3.0 -5.5 -2.63 0.89 0.11 -1.56 -2.0 0.4 0.7 0.51 -0.62 -0.46 0.08 0.21
-3.24 -3.35 3.27 1.17 4.15 2.56 1.95 -1.95 -2.7 -4.14 2.14 0.43 0.6 0.12 0.21 -0.37 - 0.93 -3.89 -3.2 -2.14 - - -3.26 - -5.59 - - -3.39 -4.3 -6.4 - - - -4.94 - -4.11 - -4.96 - - -4.85 -3.82 -3.95 -5.23 -1.52 -2.47 -3.03 -2.76 -2.05 -1.68 -2.23 -2.46 -0.97 -1.64 -3.91
-3.43 -1.66 3.64 0.66 4.16 1.04 -0.8 1.66 -2.68 -5.42 0.93 0.47 0.96 0.61 0.72 -1.98 -0.44 -1.32 -4.64 -2.02 -2.01 -0.35 -1.67 -3.71 -3.5 -1.86 -3.6 -2.86 -2.84 -1.82 -1.94 -2.15 -2.31 -2.38 -2.77 -2.23 -2.58 -3.68 -2.42 -3.19 -2.07 -2.67 -2.83 -3.09 -2.08 -0.57 -1.31 -3.55 -3.48 -2.22 -1.9 -3.25 -3.23 -3.28 -3.07 -1.8
2.62 - - - 2.76 - - - -0.64 - - - 3.47 - 1.5 - - - 1.33 - 4.03 1.66 - - - -0.03 - - - - - - - - - - - - - 0.34 - - - -0.33 - - 1.8 - - - - - - - - -
- - - - 4.11 - - - - - - 3.5 3.56 - 3.09 - - - 1.05 - - - - - - - - - - - - - - - - - - - - - - - 2.12 - - - - -0.33 - - - - - - - -
- - 1.23 - 3.56 - 4.2 - - - - 2.97 3.01 1.73 1.98 - - - -1.82 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.32 0.21 2.94 2.26 3.47 1.01 0.21 1.94 -8.18 -10.44 0.48 0.92 1.25 0.71 1.25 -0.7 -0.48 0.69 -9.54 -2.72 0.13 1.43 -1.63 -3.4 -3.22 -1.1 -2.84 -2.64 -2.37 -2.56 -3.21 -3.37 -3.33 -2.8 -2.92 -3.13 -3.24 -2.65 -2.91 -2.96 -3.02 -3.23 -4.16 -6.19 -7.78 0.81 0.22 -4.95 -3.65 -6.0 -2.7 -2.76 -4.19 -6.66 -2.99 -2.32
- - 1.86 2.45 4.22 - - - - 2.35 0.67 1.03 1.06 4.06 - - - - -1.19 - - - - - - -1.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.3 -0.96 1.57 1.61 3.64 0.45 - 1.22 -1.45 0.01 -0.38 -1.17 0.61 -0.26 -1.44 2.35 - 2.77 0.34 -0.21 -1.34 -1.79 0.46 -1.46 0.07 -2.34 -1.35 -1.46 -0.59 -0.91 -3.52 - -2.4 - - - - -2.57 - -1.87 - - -1.54 -1.3 -0.2 1.04 -0.67 -3.58 -3.35 -3.42 -2.45 -2.39 -1.21 -1.3 -0.15 -3.28
- -1.11 2.35 0.42 3.58 1.42 - 1.99 -0.51 -2.03 - - - - - - - - -0.81 -2.96 - - - - -1.08 -4.13 -1.92 - - - 1.27 1.44 1.07 1.46 0.64 1.37 0.82 2.12 0.9 0.29 1.88 -0.42 - - - - - -2.16 -3.67 - - - - - - -
- -0.41 3.23 0.57 4.41 2.38 - 1.86 -1.18 -3.19 - - - - - - - - -1.32 -4.61 - -3.39 - -2.17 - -6.24 - - - - 0.01 0.2 0.14 0.02 -0.27 0.01 -0.41 1.05 -0.49 -0.46 0.58 -3.16 - - - -4.34 - -2.61 -3.06 -2.43 -2.62 -4.49 -4.0 -2.8 - -
- - - - 3.37 - 3.9 - - -0.24 2.42 3.94 - -0.28 1.97 - - - -0.45 - 0.74 - - - - -3.79 - - - - - - - - - - - - - - - - - - - - - -2.82 - - -0.18 - - - -0.08 -
-0.6 -1.71 1.83 1.13 3.98 2.55 3.77 -0.93 - - -0.64 -0.01 -2.35 -0.98 -2.72 - - 1.9 - -1.16 0.08 -0.55 - - - -1.48 - - - - - - - - -2.41 - - - - - -0.9 - - -1.8 -1.99 -0.13 0.58 - - -1.14 -1.49 - - - - -2.11
-0.92 -1.24 3.13 1.65 3.32 1.63 -1.46 2.42 -6.35 - 0.53 0.63 0.28 1.45 -0.01 -0.69 1.1 1.75 -8.53 -2.28 -0.73 1.56 -2.05 -3.9 -2.69 -0.51 - -3.32 -1.93 -3.59 -3.97 -5.32 -4.76 -5.13 -4.99 -7.06 -4.01 -4.31 -4.29 -3.74 -4.64 - -4.11 -3.39 -3.14 0.98 1.01 -4.02 -4.11 -5.37 -9.33 -7.58 -6.03 -6.03 -6.28 -4.02
- - 1.85 - 2.11 - - -0.17 -0.98 -2.69 - -0.99 2.19 - -0.39 - - - - -1.22 3.92 - 2.42 - 1.99 -2.4 - 2.3 0.59 - -1.95 - -1.11 -0.0 - - -0.82 -1.43 - - 1.12 - - -2.2 0.94 0.76 - - -3.92 - - - - - - -1.14
- - 3.72 0.78 4.98 1.71 -3.99 -0.65 -12.03 - 0.1 -0.43 -0.37 0.5 -0.26 -3.1 -2.82 -3.02 -9.37 - -4.85 -3.53 - - - -6.51 - - - - - - - - - - - - - - - - - - - -5.61 -3.65 -6.59 -5.72 - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.