- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.8 | -1.14 | - | -2.4 | -0.54 | - | - | 3.54 | 1.44 | -1.31 | - | - | - | - | - | - | - | - | -1.92 | -2.99 | 3.82 | -0.07 | 2.28 | -3.05 | -1.52 | 0.49 | 0.23 | -2.05 | -0.86 | -1.09 | -2.99 | -2.08 | -1.62 | -0.85 | -2.36 | -1.68 | -3.06 | -4.04 | -1.98 | -4.3 | -0.89 | -4.04 | 0.56 | -2.23 | -3.41 | -2.9 | 1.68 | 1.49 | 1.47 | - | - | - | - | - | - | -5.43 | |
| 0.03 | -1.66 | - | 1.43 | -3.12 | -0.56 | - | 3.3 | 1.62 | -1.23 | - | - | - | - | - | - | - | - | -0.59 | - | 4.13 | 0.29 | 2.45 | - | - | -0.56 | - | - | -1.71 | -1.61 | -1.66 | -1.61 | -2.54 | -2.46 | - | -2.31 | -2.7 | - | - | - | -0.74 | -1.29 | -0.51 | -1.61 | - | -0.37 | 1.44 | 1.12 | 1.3 | - | -2.62 | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.