Heatmap: Cluster_50 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- -0.28 - - - - - 1.57 -2.43 - - -0.88 - - - - - - -0.47 - - - - - - -4.69 - - - - -2.18 - - - - - - - - -0.81 - - 0.61 1.83 5.02 - 1.59 -3.65 -2.58 1.46 0.46 -0.12 -0.17 1.32 - -0.63
1.99 2.24 - -2.2 -2.88 -1.25 - -1.0 -4.07 -2.72 - -1.44 - - - - - - -5.66 - 0.37 -3.64 -2.63 -2.74 - -2.57 - -2.74 - -2.78 - - - - - - - - - - - - 1.69 2.4 4.93 -0.31 - -2.91 -1.54 - -3.55 - - - -3.54 1.48
0.81 -0.36 - -2.41 - - - 1.81 -2.43 1.2 -4.74 - - - -2.06 - - - 1.07 -1.4 2.0 -0.6 -0.04 -2.77 -0.14 -1.77 -1.66 -0.73 -0.44 -0.68 0.22 0.65 0.29 0.07 -0.42 -0.43 -0.74 0.1 -0.82 -0.1 -0.81 -0.47 1.67 2.04 3.79 0.01 -0.39 -2.5 -1.9 -3.46 -1.46 -2.3 -3.32 -4.67 -3.55 -2.5
-0.62 -2.62 - -2.19 - - - -2.76 -6.81 -7.26 - - -12.01 - -5.98 - - - - -2.92 2.88 -5.75 2.9 - - 1.06 - - -10.55 - -7.0 - -4.1 -5.61 -5.64 - - - - - - - 2.66 2.01 4.46 1.87 0.35 -3.84 -1.64 - - - - - - -
2.68 -0.71 - - - - - - - - - - -4.1 - - - - - - -2.9 - 1.19 - - - -0.58 - - - - - - - - - - - - - - - - -3.73 1.43 5.4 - -0.91 -2.57 -1.92 - - - - - - -
- - - - -4.19 - - - -4.81 -5.03 - - - - -3.62 - - - - - - 0.09 -2.35 - - -4.24 - - - - - - - - - - - - - - - - 1.63 2.71 5.46 -1.32 - -4.95 -2.26 - - -3.33 - - - -
-1.56 0.33 - - - - - -1.42 - - - -1.28 - - -1.71 - - - - - - 2.1 - - -1.63 -5.43 - - -0.13 0.97 - - - - - - - - - - - - - -1.62 5.34 1.82 0.62 - - - - - - - - -
- - - - - 1.54 - - -2.69 - - -0.11 - - - - - - 2.61 - - - - - - 2.29 - - - - - - - - - - - - - - - - 3.49 0.59 4.38 1.46 - -1.22 1.8 -0.33 - - - - - -
- - - - -2.97 - - -2.14 - 0.42 - -1.95 0.83 - -1.04 - - - 0.42 - - - - - - -1.29 - - -1.38 - 0.47 -2.28 - -0.3 -2.04 0.6 - -0.35 -0.29 - 0.43 -1.11 - - 5.36 - - - - - - - - - - 0.02
-2.17 -1.7 -3.07 - -4.92 - - -3.98 - - - -2.94 -2.88 - -2.73 - - - - -1.99 -1.49 0.65 -0.27 -2.2 -2.25 -5.78 -3.09 -1.19 -2.33 -0.65 - - - - - - - - - - - - - - 5.55 0.74 0.47 - - - - - - - - -
-4.81 - - -1.44 - -2.01 - -2.63 - - - -3.96 -5.56 - - - - - -5.18 - -0.13 - -3.13 - - -5.0 - - - - - - - - - - -5.74 - - - - - 1.94 2.98 5.38 -0.75 -3.63 -7.49 -5.32 - - -5.69 - - - -
-5.26 -3.78 - - - -3.06 - -3.34 -3.61 0.07 - -3.55 -6.02 -1.89 -3.71 - - - -2.54 -1.68 -0.63 -3.62 -2.16 0.92 -0.2 -2.42 -0.64 -0.52 -1.95 -0.67 1.16 1.36 1.31 1.61 1.5 1.21 1.08 1.12 1.34 0.75 1.47 0.75 -5.91 -5.97 3.76 -3.06 -1.49 -3.16 -2.11 -0.6 0.09 0.12 -1.61 -0.59 -0.28 -4.0
- - -1.12 -1.53 -0.78 0.07 - -2.14 -2.9 1.6 - 0.86 2.73 -0.04 0.45 2.01 - - 1.12 - - - - - - -0.34 - - - - -1.84 - - - - -0.46 - -0.85 -0.53 -0.84 - - - -1.75 4.71 - - -1.29 -2.37 -2.34 -2.3 -0.59 -0.26 -1.29 -2.05 -
-0.3 0.61 -5.19 - -3.95 -5.52 -2.05 -2.24 -3.82 -6.22 - - -3.21 - - - - - - - 0.95 -3.23 1.0 -5.32 - -3.83 -5.21 - -4.45 - -5.72 - - - - - - - - - - - 0.51 0.12 5.34 2.42 -2.53 - - - - - - - - -4.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
0.94 - - - - - - - 2.03 -1.22 - - - - - - - - -3.0 - - - - - - -6.46 - - - - - - - - - - - - - - - - 0.99 2.87 5.16 - - -0.5 -2.5 - -0.88 0.96 -1.13 - -0.88 -
1.34 1.7 -2.73 -1.57 -3.03 - - -2.45 -4.57 - - -5.12 -5.17 -5.77 -3.97 -3.05 - -3.5 -6.17 -3.38 1.87 -3.02 1.26 -2.86 -3.49 -3.61 - -4.44 -3.57 - - - - - - - - -3.68 -5.59 - - - 2.03 1.77 4.71 3.02 -1.65 -7.95 -5.43 -5.4 - - -4.63 -5.33 -5.24 -6.86
- - - - - - - - -2.54 - - 1.13 - - - - - - -0.25 - - - - - - -0.6 - - - - - - 2.19 1.35 - - - 2.6 - - - - - - 5.06 - - - - 0.89 - 0.85 - - 0.97 -
2.4 -4.18 - - - - - -4.98 -7.34 - - - - - - - - - - - 0.61 2.16 2.17 - - -3.12 -4.98 - - - - - - - - - - - - - - - - - 4.9 3.14 0.2 -5.74 -3.5 - - - - - - -
- - - - - - - - -2.38 -0.66 - 1.15 1.1 1.44 - - - - 1.45 - - - - - - -6.61 - - - - - - - 1.25 - -0.07 - - - - - - - - 5.38 - - - - - - - - - - -1.63
- - - - 0.56 - - - - - - -0.31 - - -0.7 - - - -1.95 - - - - - - -1.47 - - - - - - - - - - - - - - - - 0.33 -1.52 5.67 - - - -3.07 - - - - - - -
4.51 - - - - - - - - - - - - - - - - - - - - - - - 4.43 - - - - - - - - - - - - - - - - - - - 3.55 - - - - - - - - - - -
-3.17 -6.8 -0.93 -0.04 -2.22 -1.09 -0.49 1.48 -2.85 -1.92 -1.18 -0.02 -0.06 0.42 0.45 -1.85 -2.85 -1.59 -1.78 -5.7 0.67 -6.66 0.06 -6.69 -5.83 -6.29 - -6.74 -5.29 -6.79 -7.8 - -7.66 - -7.2 -7.31 -6.86 -8.87 -5.7 -7.19 -7.41 -6.1 -3.37 -4.71 5.34 -2.6 -4.56 -9.27 - - - - - - - -
- - 1.1 -0.02 -0.82 -0.98 -0.01 1.73 -2.46 1.03 0.81 0.12 -0.73 -1.41 -0.29 0.04 - -1.41 1.31 -1.07 1.68 -2.29 1.35 0.46 -0.08 -1.2 -2.24 0.65 -1.48 0.61 -2.02 -1.05 -1.4 -2.23 -1.62 -2.26 -2.96 -1.99 -1.25 -3.6 -1.07 -0.88 1.09 0.91 3.76 -0.06 -1.15 -3.96 -3.2 -3.72 -1.6 -3.56 -3.75 - -1.65 -3.88
-2.17 0.52 - -0.34 -0.45 - - 0.54 -3.04 -0.97 - 0.68 -2.85 -1.21 -0.15 - - -2.26 -1.51 - - -3.09 -0.49 - -2.25 -0.56 - - -1.33 -2.23 -0.24 -2.11 0.36 0.07 0.01 -0.67 0.03 -0.58 -1.12 -3.45 0.34 -2.19 -1.12 0.89 4.82 -0.39 - -2.57 -1.72 -0.2 0.31 -0.12 -1.24 -1.73 - -1.46
- - - - -0.05 - - - -1.67 -1.21 - - - - - - - - -0.37 - - 0.47 - - - -2.36 - - - - 1.17 1.5 1.84 1.63 - -0.12 0.3 1.0 - - - 1.81 - - 4.92 - - - - 0.22 - - - 0.13 - -
- 2.88 - - - - - - - - - - 1.24 - - - - - 1.86 - - - - - - - - - - - - - 1.01 - - - - - - - - - - - 5.34 - - - - - - - - - - -
- - 2.22 - - - - - - - - - - - - - - - - - - - - - - -1.71 - - - - -0.97 - - - - - - - - - - - - - 5.27 3.04 - -0.64 0.24 - - - - - 0.22 -0.29
- - - - - - - - - - - - - - - - - - - - - - - - - 0.48 - - - - - - - - - - - - - - - - 2.65 2.43 5.34 - - - 1.31 - - - - - - -
-1.32 -3.41 - -5.19 -3.05 - - -2.63 0.13 -2.09 -1.02 -1.0 -1.73 -0.23 -1.86 - - - -2.33 - -0.04 1.33 3.22 - - 0.34 - - -3.46 - -3.12 -4.36 -2.48 -1.48 - - - - -3.02 -3.55 -1.98 - -1.64 -0.83 4.68 2.82 -1.54 -0.63 -0.09 - -4.26 -3.24 - -4.53 -3.17 -3.14
- - - - - - - - - - - - - - - - - - - - - - - - - 0.48 - - - - - - - - - - - - - - - - 2.65 2.43 5.34 - - - 1.31 - - - - - - -
- - -0.54 0.67 - -2.54 - -2.13 -3.04 -2.69 - -1.39 -2.04 -5.05 -3.79 - - - -2.54 - -0.38 -1.56 1.7 - - -3.83 - - - - -5.45 - -4.5 -4.24 - - - - - -4.26 -3.53 - 2.89 2.5 4.99 1.16 - -3.52 -3.29 - -4.72 -3.62 -3.71 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
-1.79 -4.01 - - - - -3.81 -4.4 -7.69 - - -4.36 -7.01 - -7.37 - - - -8.79 -4.19 1.2 -7.14 1.76 - - -1.97 - - -6.4 - - - - - - - - - - - - - 3.35 2.7 4.9 0.98 -0.54 -4.96 -2.89 - - - - - - -
- - - - - - - - - - - - - - - - - - 3.3 - - - - - - 2.89 - - - - - - - - - - - - - - - - - - 5.28 - - - - - - - - - - -
4.37 3.48 - - - - - - -3.62 - - 1.04 - - - - - - 1.63 - - - - - - 1.13 - 0.76 - - -1.02 - - 1.04 - - - - - - - - - - 3.28 - 0.96 - -2.72 - - - -0.43 - - -
0.68 0.57 - - - - - 2.63 -3.83 - - - - - - - - - - - - -0.28 1.77 - - -1.64 - - - - - - - - - - - - - - - - 0.35 2.45 4.75 2.11 - -0.92 - - - - - 1.4 -0.19 -
2.85 -1.58 - -1.55 - -1.58 - -2.28 -0.26 -0.92 - - -3.25 - - - - -0.55 0.1 -1.85 -2.37 -1.43 -0.05 -0.17 -0.55 1.26 -0.38 -0.17 -2.62 -2.53 0.28 -0.68 0.4 0.12 -0.67 -1.02 -1.84 0.44 0.54 -1.38 0.16 -0.5 -0.17 -1.13 4.03 -0.14 -2.29 -0.24 0.34 - -1.17 0.27 -3.39 - 0.83 0.52
- - - - - - - - - - - -1.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.14 2.38 5.32 0.6 - - - - - - - - - -
- 1.14 - - -0.49 - - - - 0.31 - - 3.5 - - - - - - - - - - - - -2.7 - - - - - - - - - - - - - - - - 3.26 2.25 4.69 - - -2.24 - - - - - - - -
- - - - - - - - -1.96 0.12 - - - - - - - - -3.19 - 1.68 - 3.28 - 0.63 - -1.21 -1.32 -1.46 -1.35 - - - - - - - - - - - - 0.23 0.33 4.79 3.08 - - - - - - - - - -
1.85 1.68 - -5.05 - - -1.66 -0.93 -0.34 -2.58 - -5.47 - - -5.86 - - - -2.77 -1.71 1.28 -0.63 0.94 -0.37 -3.82 -3.23 -1.07 -3.18 -2.09 -2.22 -1.75 -1.27 -0.18 -0.7 -1.69 -1.65 -1.56 -1.5 -1.71 -1.9 -0.41 -1.71 2.02 1.46 4.38 1.7 -1.56 -2.66 -2.21 -1.85 0.63 -0.68 -2.36 -4.81 -1.63 -3.92
-0.18 - - - - - - - -0.58 1.13 - -2.16 -2.75 -1.2 -1.96 - - - -2.19 -5.83 -6.73 -4.19 - - - 0.06 -6.74 - - - 1.23 0.51 0.63 1.66 1.31 0.89 1.02 1.11 0.8 -0.26 0.71 0.58 0.24 -2.25 4.17 -6.6 -1.95 -0.3 1.09 -1.38 -0.2 0.04 -1.13 -0.99 -0.54 -0.8
-2.47 - - -4.2 - - - -1.51 -5.56 -3.75 - -7.58 -7.53 -8.31 -8.01 - - -6.94 -5.21 -5.86 -2.67 -6.82 -2.76 -5.88 -4.61 -5.24 -4.77 -4.56 -6.01 -5.33 -5.21 -6.76 -5.47 -5.45 -6.61 -4.93 - -5.74 -7.57 -7.49 -5.66 -7.74 0.31 2.85 5.52 -4.97 -4.35 -6.63 -7.73 -7.97 - -7.79 -7.0 -7.96 -4.56 -6.17
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
- - - - - - - - -3.19 - - - - - - - - - -0.52 - - - - - - 0.46 - - - - 2.1 - -0.3 1.09 0.99 - 1.8 0.55 2.59 2.14 1.72 -0.48 -0.36 -1.81 4.5 - - -3.39 -3.46 - -0.82 - - - -0.74 -2.42
-1.12 - - -4.47 - - - -2.7 -2.21 -1.73 - -6.3 - -2.91 -5.11 - - - -3.03 -0.18 1.04 -0.22 0.8 -5.6 -3.55 -1.2 -1.24 -0.57 -2.35 -1.44 - - -6.43 - - - - - -5.5 - - -6.45 2.45 2.53 4.88 1.94 0.59 -4.02 -2.04 - -5.53 -4.5 - - -2.62 -4.01
1.52 - - - - - - -3.88 0.38 0.13 - -1.9 -1.52 -0.33 -0.65 - - - -2.51 -3.93 -3.87 - - - -4.05 -2.48 - -2.99 - - 0.54 -0.73 -0.6 0.35 0.42 -0.07 0.13 0.17 -0.26 -2.25 -0.43 -0.4 - - 5.0 - -1.47 -2.17 -0.46 -2.1 -0.83 -1.33 -2.48 -3.0 0.17 -0.06
-0.41 -0.59 -0.3 -1.45 -1.32 0.48 - -0.52 0.33 1.85 - - -1.21 - - - - 0.09 0.52 - -1.31 - - -0.0 0.1 -1.37 - -0.81 -0.56 0.53 -1.16 -0.14 -2.26 -0.18 0.06 -1.05 -2.04 -2.42 -1.35 -0.44 0.45 -2.42 -1.35 - 4.54 -0.28 -0.23 -0.68 0.62 -1.28 - - -0.53 -1.32 -0.24 -0.56
- -5.21 - - -4.96 -3.45 - -4.42 -5.98 -4.96 0.6 -2.13 -1.58 - -3.43 - - - -5.01 - -1.19 - - - -5.17 -6.5 - - - - - - -5.95 - - - - - - - - - 0.65 2.94 5.44 -2.06 -2.59 -5.8 -5.21 - - - - - - -
- 3.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.03 1.86 4.73 1.4 - - -1.16 - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
- - - - - - - -1.9 0.57 -3.49 -1.99 - - -2.44 - - - - -2.93 - - - - - - 0.09 - - - - 1.31 0.05 1.23 1.55 -0.95 2.41 0.3 1.34 1.47 1.48 0.75 0.17 - -2.51 4.64 -1.76 - -3.47 -4.39 - - - - -1.9 - -
- -2.4 - -4.17 - - - -0.45 -0.13 0.4 -0.76 -0.89 0.08 -1.53 - - - - -0.84 - 0.09 -2.85 - -1.54 - -2.01 - - - - -1.18 -1.16 -2.02 -1.19 -0.78 -2.05 -2.92 -0.18 -0.9 -1.34 -0.16 -3.17 -0.69 -0.74 5.1 -2.14 0.06 -0.71 -0.72 -3.01 -0.18 0.86 - - 0.68 -
- - - - - - - - - - - - - - - - - - 4.51 - - - - - - 2.5 - - - - - - - - - - - - - - - - - - 4.78 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - 1.93 - - - - - - - - - - - - 0.92 - - - - - - 0.94 - - - 5.29 2.96 - - - - - - 0.61 - - -
0.44 - - - - - - -1.91 0.9 2.13 - - -2.31 - -2.73 - - - 1.8 - - - - - - -4.09 - - - - - - - - - - - - - - - - 1.71 2.9 4.94 - - -5.12 -5.09 -1.7 -0.32 0.79 - - - -
- - - - - - - - - - - - - - - - - - - - 3.64 - - - - - - - - - - - - - - - - - - - - - - - 4.99 3.56 - - - - - - - - - -
2.41 -2.85 - - - - - - -3.49 -5.21 - - - - - - - - -6.11 -4.71 -0.33 -0.77 2.46 - - -1.98 -2.66 -2.18 - - - - - - - - -4.67 - - - - - 0.91 1.07 4.89 2.93 0.69 - - - - - - - - -
1.72 -0.2 - - - - - -2.0 -3.38 - - - - - - - - - - - -0.99 -0.0 2.33 - - -1.54 - - - - - - - - - - - - - - - -1.96 1.07 1.7 4.84 2.89 1.42 - - - -2.04 - - - - -
- 1.55 - - - - - -2.06 -5.64 -3.66 - - - - - - - - -0.65 - -1.05 -0.48 0.95 - - -0.07 - - - - -3.16 - - - - - - - - - -2.17 - 1.61 1.31 5.25 0.74 - -3.08 -3.69 -0.58 - -2.09 - -1.31 -2.04 -0.58
- 1.48 - - - - - - - - - - - - - - - - - - 1.68 - - - - -0.51 - - - - - - - - - - - - - - - - - 1.97 5.14 3.34 - - - - - - - - - -
-1.43 -2.54 -1.0 -2.48 -1.35 - - 1.18 -0.63 0.11 0.86 -0.15 0.5 1.29 -0.25 - - - 0.49 -0.18 1.06 -1.58 0.99 -1.87 -0.7 -1.29 -0.75 0.25 -0.12 -0.68 -0.98 -0.86 -2.81 -1.65 -1.91 -0.81 -1.34 -0.55 -0.58 -2.2 -0.4 -0.59 2.08 1.82 3.85 1.17 -0.25 -3.31 -2.01 - -3.44 -2.87 -4.64 - -4.25 -5.83
- - - - - - - - - -1.1 - - -0.85 - -2.3 - - - 0.14 - - - - - - - - - - - 1.48 -0.23 0.43 0.69 0.97 -0.23 -1.1 -1.18 -0.97 -0.08 1.33 - - - 5.3 - - - - - - - - - - -
-3.79 -2.9 - -4.26 -5.17 - - 1.5 -7.07 1.04 1.04 0.85 2.7 2.13 0.72 - - - 1.36 - - - - - - -5.52 - - - - -2.22 -3.7 -2.73 - -3.93 -2.72 -3.71 - -3.2 -2.42 -4.67 -2.68 1.48 2.01 4.57 -4.56 - - -7.16 - - - - - - -
-0.75 0.47 - -2.05 - - - -1.0 -2.07 -1.78 -2.74 -2.51 -2.44 -1.17 -2.9 - - - -2.08 1.12 -0.65 - 1.81 0.55 1.5 -0.2 1.34 1.04 -0.31 0.19 -2.79 -2.65 0.33 -0.92 -1.56 - -1.52 -2.76 -1.01 - -0.93 - 0.47 -0.81 4.47 -1.07 0.02 - -5.29 -1.01 -1.69 -0.38 -0.21 - -2.61 0.26

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.