- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 0.49 | - | -1.27 | 0.43 | -2.85 | -1.17 | -0.16 | -0.58 | 0.84 | -0.61 | -1.72 | -0.21 | -1.41 | -0.05 | 0.27 | - | -0.4 | 0.53 | -0.89 | -1.0 | -1.16 | -0.55 | -1.34 | - | -0.61 | 0.57 | -0.39 | -0.89 | - | 0.52 | 0.67 | 0.6 | 1.41 | 1.27 | 1.15 | 0.34 | 0.93 | 0.97 | 1.01 | 1.03 | 0.99 | -0.85 | -1.38 | -3.24 | -0.4 | -0.09 | -0.71 | -0.06 | -0.66 | -0.02 | -0.21 | -1.65 | -0.62 | -0.74 | 2.31 | |
| - | - | - | - | - | - | - | - | 0.84 | -1.85 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.16 | 2.44 | 1.93 | 1.88 | 2.08 | 0.42 | 1.06 | 1.0 | 2.17 | 1.49 | -0.11 | 1.05 | - | - | - | - | - | -3.61 | -3.0 | -0.45 | 0.57 | 1.18 | 0.67 | 2.08 | -2.55 | 3.02 | |
| -6.18 | -3.29 | - | - | - | - | - | -5.47 | 0.57 | 1.72 | - | -6.94 | - | - | -6.33 | - | - | - | 0.89 | -3.32 | - | -2.19 | -4.5 | 0.7 | 0.19 | -5.65 | -3.51 | -3.4 | -2.09 | -3.66 | 0.9 | 2.49 | 1.95 | 1.39 | 1.8 | 0.15 | 1.39 | 1.0 | 2.12 | -0.21 | 0.39 | 0.68 | -3.96 | -3.5 | -4.35 | -3.44 | -2.19 | -1.13 | -2.16 | 0.39 | 0.52 | 0.29 | -0.09 | 1.21 | -0.52 | 2.36 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.