- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -3.8 | -3.91 | - | - | - | - | - | - | -0.65 | -4.77 | - | - | -4.55 | - | - | - | - | - | -6.17 | -1.62 | -1.7 | -0.36 | - | 1.46 | 0.37 | -1.91 | -1.71 | -0.82 | -3.95 | -2.27 | 1.13 | 1.56 | 1.44 | 1.75 | 2.24 | 0.25 | 2.1 | 1.24 | 1.7 | 1.01 | 1.11 | 1.05 | -5.88 | - | - | -1.85 | -0.81 | -1.71 | -1.6 | 2.13 | 1.31 | -0.36 | 1.22 | 1.69 | -2.36 | -3.29 | |
| - | - | - | - | - | - | - | - | -0.68 | -4.27 | - | -3.08 | - | - | -5.08 | - | - | - | -4.73 | -2.09 | -3.85 | -1.79 | - | 0.23 | -0.44 | -2.59 | -1.86 | -1.16 | -2.1 | -2.01 | 1.7 | 1.9 | 1.23 | 1.96 | 2.44 | 0.79 | 2.2 | 1.82 | 1.63 | 1.56 | 0.85 | 1.87 | -6.03 | -4.15 | - | -3.98 | -0.63 | -1.83 | -1.65 | 1.85 | 0.52 | -0.5 | 0.34 | 1.2 | -1.02 | -3.46 | |
| - | - | - | - | - | - | - | - | -1.29 | -5.59 | - | - | - | -2.89 | - | - | - | - | - | -4.05 | -3.0 | -1.39 | - | 0.54 | -1.58 | -2.19 | - | -3.11 | -3.25 | -1.57 | 1.73 | 1.83 | 1.44 | 2.32 | 2.43 | 0.93 | 2.37 | 2.11 | 2.01 | 1.6 | 1.08 | 1.57 | -4.17 | -3.81 | - | -3.45 | -1.24 | -1.19 | -1.95 | 1.36 | 0.41 | -1.7 | 0.63 | 0.63 | -3.82 | -3.28 | |
| -3.67 | -3.78 | - | - | - | - | - | - | 0.39 | -4.59 | - | - | - | - | -4.8 | - | - | - | - | -1.95 | -3.58 | -1.05 | - | 1.35 | -0.75 | -2.3 | -2.58 | -1.69 | -1.82 | -0.73 | 1.16 | 1.17 | 1.49 | 1.16 | 2.08 | 0.11 | 1.97 | 1.15 | 1.3 | 0.76 | 1.07 | 1.26 | -3.78 | - | -4.63 | -3.44 | -1.49 | -1.13 | -0.71 | 2.64 | 1.6 | 0.37 | 1.43 | 1.94 | -1.2 | -2.83 | |
| -2.97 | - | - | - | - | - | - | - | 0.01 | -3.79 | - | - | - | - | - | - | - | - | -6.15 | -1.13 | -3.88 | -0.54 | - | 1.94 | 0.2 | -1.66 | -1.08 | -2.99 | -1.8 | -1.71 | 1.39 | 1.86 | 1.35 | 1.45 | 1.64 | 0.35 | 1.67 | 0.95 | 1.64 | 1.67 | 0.7 | 1.09 | -4.48 | -4.49 | - | -3.22 | -1.79 | -0.89 | -0.73 | 2.34 | 1.2 | -0.29 | 1.33 | 1.61 | -0.92 | -3.44 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.