Heatmap: Cluster_85 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo100448	-0.02	-1.58	-1.69	-0.05	-0.43	-0.54	0.74	0.9	0.57	0.72	-0.45	0.38	-1.66	-2.85	-1.36	-0.53	0.17	0.14	-0.09	-	-	-	0.06	-0.42	-	0.36	0.74	1.03	0.29	0.9	1.28	1.17
Smo100734	-2.19	-1.9	-1.03	-0.96	-1.03	-0.42	0.44	-0.19	0.02	0.21	-0.49	-0.57	-0.19	-0.19	0.37	0.05	0.92	0.45	-0.98	-	-1.2	-	0.45	-0.45	-2.02	-0.56	1.24	0.84	0.7	0.67	1.18	1.34
Smo102321	-0.83	-1.91	-1.26	-0.65	0.76	0.62	0.87	1.0	-0.4	-0.18	-1.33	-0.98	-2.43	-4.44	-1.33	-1.22	0.73	1.96	-0.07	-	-1.51	-2.08	0.03	-0.26	-0.9	-1.26	0.72	0.18	0.91	0.92	0.86	0.26
Smo102556	-1.0	-1.2	0.17	-0.53	0.44	-0.16	1.15	0.96	0.16	-0.29	-0.62	-0.49	-2.29	-2.21	-1.21	-1.36	0.43	1.77	-0.49	-	-	-0.61	0.32	-0.29	-	-1.54	0.62	-1.93	0.84	0.67	1.49	0.82
Smo103597	-0.87	-1.14	-2.11	-0.58	-0.03	0.36	0.87	0.53	0.11	0.88	0.17	-0.45	-0.86	-3.29	-2.62	-0.32	0.49	1.28	0.72	-	-	-	0.24	0.09	-0.9	-0.94	-0.69	-0.02	1.08	1.13	1.08	0.45
Smo114070	-0.01	-0.49	-0.22	0.43	-0.42	0.39	0.59	0.95	0.04	-0.19	-0.11	0.41	0.41	-1.24	-0.16	0.01	0.28	0.81	0.4	-1.44	-	-	0.65	0.12	-	-1.36	-0.73	-0.41	0.47	0.61	0.47	0.53
Smo115449	-1.15	-2.11	-0.75	-0.68	-0.05	0.8	1.15	0.92	0.37	-0.57	-0.44	-1.06	-1.04	-3.47	0.29	-1.24	0.15	0.56	-0.61	-	-3.07	-	0.01	0.02	-1.14	-1.01	1.19	1.39	0.45	0.89	0.94	0.61
Smo126675	-0.52	-0.55	-3.09	-2.55	-1.69	0.27	0.27	1.44	0.57	0.17	-0.4	-0.13	-1.0	-2.89	0.48	-0.08	-0.3	0.83	-0.13	-	-	-	0.03	-1.15	-0.85	-0.63	0.84	0.89	0.44	0.71	1.39	1.14
Smo130421	-0.81	-0.92	-2.18	-1.4	-0.98	1.22	0.72	0.55	0.4	0.32	-0.98	-0.76	-1.83	-2.55	-0.11	-0.99	0.24	0.27	0.06	-2.85	-	-0.48	0.05	-0.1	-1.32	-0.2	1.4	1.11	1.01	0.93	0.45	0.27
Smo131638	-1.28	-1.6	-1.91	-1.99	1.3	0.24	1.11	1.2	0.81	0.19	-0.1	-0.89	-1.94	-3.51	-0.69	-1.52	0.1	0.87	-0.33	-4.3	-	0.01	-0.03	-0.35	-2.01	-1.46	0.55	0.2	0.82	1.07	0.92	0.54
Smo133320	-0.38	-2.59	-1.3	-0.88	-0.05	0.57	0.95	0.66	0.38	0.04	0.62	0.38	-1.81	-3.76	-0.69	-0.53	0.3	0.69	0.35	-	-0.95	-	0.0	-0.55	-2.25	-0.76	0.05	0.36	0.93	0.79	1.18	0.98
Smo134559	-1.58	-0.87	-2.42	-0.91	1.69	0.61	0.62	0.36	0.92	-0.09	-0.84	0.01	-1.83	-2.08	-1.18	-0.45	-0.14	1.54	-0.22	-	-	-2.81	-0.18	0.43	-	-0.25	0.62	-0.2	1.03	1.12	0.1	0.23
Smo135827	-2.13	-0.88	-1.29	-1.03	0.29	0.56	-0.34	0.01	-0.21	-0.48	0.6	-0.04	-0.47	-2.61	-0.62	-0.5	0.14	0.86	0.38	-	-2.37	-	0.6	0.01	-0.04	-0.49	0.1	0.21	1.14	1.21	1.28	0.78
Smo137492	-1.81	-2.03	-0.51	-0.62	-0.47	0.61	1.21	0.89	0.99	0.04	0.13	-0.46	-3.11	-3.19	-0.23	-1.62	-0.08	1.16	-0.74	-	-	-0.2	0.29	-0.46	-	-0.48	0.61	-2.15	0.8	0.77	1.4	1.21
Smo17035	-1.81	-1.21	-0.91	-0.4	0.23	0.4	0.7	1.04	0.44	0.5	0.15	-0.27	0.09	-1.79	-1.13	0.16	-0.04	0.19	0.52	-	-5.26	-	0.19	-0.02	-4.61	1.27	0.56	0.66	0.27	0.14	0.24	0.57
Smo19658	-1.09	-2.48	-3.01	-2.01	0.27	0.43	1.04	0.74	1.29	0.02	0.01	-0.39	-2.27	-3.08	-0.64	-0.61	0.2	1.71	0.2	-	-	-	-0.58	-0.51	-	-0.58	1.62	0.64	0.6	0.33	0.61	0.4
Smo19675	0.63	-1.7	-1.74	-0.4	-1.37	-0.64	0.65	1.16	0.02	0.12	-0.95	-0.07	-0.28	-3.89	-0.44	-0.09	0.43	1.08	0.87	-	-	-	0.58	0.42	-	-1.55	-1.45	-1.43	1.06	0.97	1.47	1.08
Smo20225	-1.0	-1.59	-1.01	-1.09	-0.67	0.02	0.43	0.87	0.67	0.22	-0.42	-0.66	-0.89	-1.83	-0.02	-0.73	0.65	0.36	0.15	-1.77	-2.89	-1.94	0.15	-0.13	-2.7	-0.46	0.83	0.57	0.94	0.88	1.14	1.04
Smo26754	-0.44	-1.4	-1.29	-0.31	-0.31	0.76	0.85	0.62	0.65	0.24	-0.35	-0.12	-1.07	-2.71	-0.09	-0.34	0.39	0.35	0.44	-5.95	-2.39	-2.83	0.23	-0.11	-2.95	-0.49	0.83	0.39	1.05	0.82	0.54	0.51
Smo26900	-0.45	-2.14	-0.48	-0.74	-0.22	0.53	1.15	1.17	-0.15	0.57	-0.46	-0.68	-1.37	-2.35	-0.67	-1.12	0.55	0.33	0.39	-	-	-	-0.63	-0.56	-	-0.2	0.93	1.34	1.01	0.88	0.85	0.29
Smo27279	0.97	-3.35	-	-1.9	0.2	-0.19	-0.92	-1.58	-1.06	-3.3	0.06	-0.8	-0.44	-0.01	-3.74	0.1	-0.59	-2.38	1.77	-	0.93	-	-0.64	0.61	-1.33	-1.05	-1.9	-	1.2	1.66	1.91	1.58
Smo36412	-0.5	-2.2	-1.05	-0.34	1.17	0.47	0.42	0.88	0.17	0.31	-0.44	-0.21	-0.05	-1.9	-0.33	0.41	0.08	0.68	0.72	-	-	-0.83	0.37	0.02	-	-1.08	-0.98	0.09	0.71	0.99	0.67	0.28
Smo38770	-0.4	-2.42	-0.48	-0.77	0.99	0.12	1.22	1.18	0.31	0.34	0.1	-0.81	-3.97	-1.08	-1.38	-2.32	0.42	1.42	-0.16	-	-	-	-0.14	-2.1	-0.45	-2.26	0.84	0.55	0.93	0.98	0.75	0.06
Smo402718	-1.28	-0.77	-0.47	-1.64	-0.17	0.47	1.15	0.76	1.14	0.13	0.44	-0.32	-4.06	-	-2.26	-2.37	0.69	1.9	-0.17	-	-	-	0.17	-1.17	-	-	-	-	1.39	0.7	1.89	1.08
Smo404203	-1.34	-1.64	-2.53	-1.58	-0.35	0.91	0.26	0.82	1.3	-0.18	0.19	-0.87	-0.96	-	-0.75	-0.55	0.77	1.22	-0.03	-4.26	-	-	0.04	-0.24	-	-0.8	1.33	0.95	1.04	0.73	0.78	-0.08
Smo405125	0.43	-1.1	-1.32	-0.72	-2.42	0.88	-2.62	0.92	0.48	0.14	-0.32	0.96	-0.11	-	-0.87	-0.61	0.75	0.68	0.77	-	-1.14	0.08	-0.81	-0.85	0.58	0.15	-	-0.24	1.17	1.16	-1.16	0.78
Smo411195	1.65	-0.57	0.41	-0.06	-0.57	-2.88	-1.4	-2.15	0.37	-1.59	-0.04	-0.4	-1.7	-	-2.98	-0.49	0.12	-1.77	-0.37	-2.07	-	-	1.04	1.14	0.79	-1.15	-0.98	-1.62	0.43	0.87	1.46	2.14
Smo411649	-0.96	-0.94	-1.69	-0.45	1.21	0.95	0.94	0.94	0.12	0.93	0.1	-0.66	-4.26	-4.29	-1.9	-1.41	0.48	0.75	-0.5	-3.31	-	-1.02	0.9	-0.08	-	-1.11	0.71	0.36	0.77	1.04	0.39	-0.42
Smo412290	-1.5	-3.33	-2.5	-2.21	0.89	-0.25	0.85	0.9	0.72	-1.01	-0.45	-2.31	-1.71	-4.21	-1.13	-1.64	-0.41	1.36	-0.09	-	-	-	-0.2	-0.69	-0.63	0.66	1.98	1.92	0.93	0.75	-0.48	-0.78
Smo422726	-0.64	-0.71	-1.8	-1.0	-4.1	1.31	1.06	1.25	0.75	-0.33	-1.3	-0.81	-0.53	-3.15	-0.74	-1.34	0.68	1.82	-0.03	-	-	-	0.46	-0.79	-	-1.98	0.36	-0.75	1.15	1.09	1.04	0.17
Smo422832	-0.5	-1.32	-1.0	-1.33	1.72	-0.32	0.42	0.67	0.69	0.0	0.25	-0.12	-0.4	0.1	-0.04	0.03	0.55	-0.15	0.27	-	-	-	0.09	0.2	-0.84	-0.72	-0.0	-0.55	0.75	0.56	0.58	0.18
Smo423446	1.66	1.03	-0.96	-0.83	0.99	1.66	0.39	-	-	-	-1.77	-1.35	-3.29	-	-	0.43	-	1.07	2.36	-	-	-	-	0.58	-	-	-	-	0.27	1.25	1.36	1.18
Smo425944	-0.47	-1.52	-1.4	-0.78	0.05	0.61	1.03	0.58	0.9	0.29	0.06	-0.52	-0.82	-2.49	-0.52	-1.18	-0.08	0.58	0.25	-1.75	-1.37	-2.91	0.11	0.02	-2.01	-0.54	0.51	0.64	0.67	0.81	0.89	0.56
Smo429713	-1.03	-0.91	-2.86	-1.45	0.26	-0.25	0.27	0.33	0.22	0.07	-0.15	-0.51	-0.48	-2.19	-0.78	-0.27	0.22	0.69	0.56	-0.91	-2.12	-2.4	0.33	0.53	-0.6	0.08	0.68	1.27	0.33	0.62	0.83	0.68
Smo430361	-0.47	-1.0	-1.41	-1.73	-0.12	-0.11	1.4	1.33	0.49	0.36	-0.1	-0.5	-1.34	-4.08	-0.04	-2.17	-0.09	-0.91	-0.87	-	-1.42	-1.9	-0.34	-0.48	0.4	-0.46	1.31	1.26	0.69	0.89	0.59	0.08
Smo432285	-0.62	-0.71	-2.24	-0.38	1.15	0.68	0.65	0.83	1.08	0.53	-0.04	0.36	-2.49	-	-2.17	-1.19	0.44	0.09	0.86	-	-	-	-0.06	-1.1	-2.74	-0.24	0.82	1.14	0.22	0.83	0.4	0.04
Smo445701	-1.54	-0.42	-	-1.44	1.19	0.73	0.36	1.23	1.53	0.08	0.21	-0.5	-2.57	-2.73	-0.01	-1.43	-1.08	-0.48	0.59	-3.59	-	-0.56	-0.9	-0.08	1.01	-2.66	1.38	1.19	0.06	0.09	-0.45	-0.66
Smo49196	-0.39	-0.5	-0.68	-0.13	-0.2	1.17	1.53	1.16	1.35	0.04	0.51	-0.16	-2.02	-4.5	-1.34	-2.45	0.18	1.29	-1.2	-	-	-	-0.86	-1.02	-1.87	-1.6	-0.03	-0.45	0.86	0.58	1.03	0.35
Smo59650	-0.33	-2.23	-3.47	-1.72	-1.59	1.03	0.16	1.12	-0.2	-0.06	0.01	-0.87	-1.24	-3.09	-1.42	-0.97	0.64	1.89	1.87	-	-	-	-0.43	0.01	-1.16	-1.95	-0.12	-0.41	1.13	1.02	0.42	0.59
Smo70094	-0.49	-1.99	-1.66	-0.52	-0.43	1.09	0.94	0.94	0.34	-0.36	-0.43	-0.93	-1.79	-2.95	-0.65	-1.58	0.69	1.21	-0.1	-0.12	-3.92	-2.07	-0.47	-0.21	-0.77	-2.25	0.21	-0.22	0.78	1.05	1.42	0.73
Smo71673	-1.19	-2.52	-1.23	-0.43	-0.09	0.81	0.62	1.0	0.65	0.05	0.04	-0.65	0.62	-1.23	-0.93	-0.19	0.2	1.43	0.63	-5.71	-1.74	-	-0.16	-0.42	-1.95	-0.75	-0.45	-0.54	0.83	0.67	0.81	0.7
Smo71754	-0.79	-1.94	-4.34	-1.29	-0.43	0.54	0.1	1.37	1.26	0.28	-0.35	-1.07	-2.84	-3.0	-0.09	-2.74	-0.31	1.42	-0.52	-1.86	0.48	-1.02	-0.44	-0.26	0.81	-0.85	1.08	0.63	0.86	0.57	-0.17	-0.88
Smo71785	-1.11	-0.93	-2.3	-1.37	-1.02	0.12	0.59	0.66	0.68	0.05	-0.64	-0.55	-1.56	-1.56	0.48	-0.51	0.26	0.91	0.09	-1.16	-	-	0.19	-0.3	-2.99	-0.74	1.11	1.29	1.02	0.88	0.96	0.43
Smo72031	-1.58	-2.96	-1.37	-0.68	-0.78	0.27	0.85	-0.07	0.9	0.08	-0.54	-1.39	-0.17	-3.33	-1.0	-0.81	0.23	0.89	0.2	-	-3.43	-0.63	0.35	-0.04	-0.85	0.02	0.51	0.68	1.25	1.1	1.0	0.72
Smo72055	-0.96	-0.95	-1.57	-0.82	0.3	0.05	0.47	0.16	0.18	0.26	-1.17	-0.83	-0.5	-3.24	-0.23	-0.62	0.77	1.05	0.52	-	-4.36	-3.14	0.6	0.31	0.0	-1.04	0.47	-0.0	0.87	0.68	1.31	0.79
Smo72195	-1.05	-1.84	-1.89	-1.11	-0.39	0.2	0.93	0.33	0.54	0.05	-0.11	-0.38	-1.2	-1.67	-1.25	-0.59	0.41	0.93	0.5	-1.15	-3.37	0.76	0.03	-0.36	-0.93	-1.02	0.32	0.65	1.09	0.92	0.84	0.11
Smo72439	-1.08	-3.42	-3.6	-2.2	-1.46	1.0	0.95	0.67	-0.17	0.46	-0.23	-0.02	-1.86	-1.29	-1.34	-1.32	0.62	1.74	0.15	-3.15	-2.87	-	0.71	0.21	-2.15	-2.14	-1.33	0.03	1.62	1.08	1.35	0.04
Smo72489	-0.75	-0.65	-1.37	-1.26	0.29	0.92	0.54	0.39	0.29	-0.02	-0.27	-0.38	-1.11	-2.66	-0.84	-0.58	0.44	1.31	0.2	-	-2.68	-2.38	0.33	-0.07	-1.04	-2.05	-0.08	-0.01	1.26	1.24	0.97	0.59
Smo74749	-0.27	-0.4	0.2	-0.14	-0.52	0.52	0.43	0.69	0.48	0.74	-0.81	-0.81	-0.91	-2.27	0.16	-0.82	0.36	0.78	0.51	-2.21	-1.2	-1.01	0.11	-0.37	-0.73	-1.48	-0.03	0.19	0.68	0.47	0.49	0.79
Smo78548	-1.09	-2.54	-1.54	-0.92	-1.0	0.76	0.99	0.67	-0.02	-0.54	-1.89	-1.97	-1.34	-2.12	0.08	-0.52	0.43	0.56	0.35	-1.78	-	-	0.4	-0.57	-0.78	-0.65	0.72	1.24	0.88	1.23	1.32	0.89
Smo78778	-0.7	-1.89	-1.1	-0.27	0.3	1.01	0.37	0.93	1.29	0.48	-0.38	-0.64	-0.51	-1.86	0.08	-0.65	0.33	-0.12	-0.01	-	-	-	-0.0	0.26	-1.52	-0.11	1.54	0.07	0.71	0.97	-0.55	-0.8
Smo79606	-1.15	-1.57	-	-1.11	1.95	0.87	0.29	1.11	0.61	-0.89	0.09	-0.89	-	-	0.4	-	0.07	0.73	-2.36	-	-0.05	-	0.03	-0.39	-	-0.29	0.97	1.88	1.04	0.47	-1.38	-0.43
Smo81012	-0.49	-0.56	-0.78	-0.67	0.56	0.34	0.83	0.76	0.64	0.49	0.23	0.02	-1.2	-1.59	-0.33	-0.25	-0.12	-0.8	1.17	-6.79	-	-3.8	-0.04	0.02	-3.01	0.27	0.37	1.16	0.19	0.22	0.67	0.09
Smo8343	-1.09	-0.54	-0.54	-0.31	0.17	-0.27	0.52	0.47	0.37	0.43	0.23	-0.14	-0.23	-1.86	-0.38	-0.12	0.16	0.24	-0.17	-1.2	-1.14	-0.29	-0.12	-0.22	-1.47	-0.06	0.24	-0.17	0.81	0.51	0.74	1.08
Smo86789	-0.59	-2.42	-1.06	-1.3	-0.55	0.62	0.43	1.1	0.13	-0.41	-0.45	-0.49	-1.8	-1.74	-0.44	-0.55	0.18	0.49	0.85	-	-	-	0.64	-0.16	-	-	0.25	-0.41	1.51	0.91	1.77	1.25
Smo88277	-0.67	-1.31	-2.11	-1.61	-0.51	0.75	0.28	0.63	0.64	0.34	-0.02	-1.52	-2.28	-2.33	-0.58	-1.14	-0.09	0.08	-0.19	0.11	1.13	-0.68	-0.04	-0.79	0.0	-0.25	1.15	1.06	0.69	0.74	0.14	-0.45
Smo8979	-0.3	-1.0	-0.76	-0.32	0.79	-0.56	0.71	-0.13	-0.24	0.17	-0.47	-0.49	0.73	-1.06	-1.3	1.05	0.1	0.47	1.0	-3.28	-3.16	-2.27	0.57	0.31	-	-0.23	-0.16	-0.26	0.52	0.48	0.56	0.87
Smo92605	-0.22	-0.36	-1.89	-0.73	0.3	0.5	0.55	0.59	0.29	-0.08	0.77	-0.18	0.53	-1.53	-0.14	0.4	0.15	-0.38	0.62	-3.22	-	-	0.66	0.41	-	-0.87	-0.14	-0.77	0.61	0.49	0.89	0.88
Smo95641	-0.51	-1.45	-0.9	-0.27	-0.24	0.42	0.6	0.74	0.55	0.37	0.13	-0.04	-1.69	-1.03	-0.05	-0.64	-0.11	0.01	1.42	-	-1.02	-5.85	-0.4	-0.6	-1.4	-0.15	0.46	0.59	0.22	0.46	1.0	0.78
Smo96070	-0.59	-1.15	-0.86	-0.71	-0.0	0.31	0.46	0.49	0.49	0.36	0.04	-0.3	-1.28	-2.01	-0.3	-1.26	-0.1	0.32	0.11	0.02	-0.04	-3.52	-0.16	-0.39	-0.53	-0.27	0.75	0.98	0.57	0.49	0.74	0.63
Smo96295	-0.24	-0.57	-0.62	-0.39	0.3	0.07	0.37	0.23	0.28	0.2	-0.23	-0.21	-1.08	-1.2	-0.26	-0.82	0.51	1.1	-0.06	-2.9	0.31	-1.1	0.28	-0.09	-1.21	-0.69	0.09	0.54	0.78	0.44	0.52	0.41

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.