Heatmap: Cluster_47 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-2.72 -2.35 -2.58 -1.82 -1.38 -1.19 -3.27 -3.31 -4.43 -3.8 -3.73 -3.15 -3.15 -3.08 - -3.28 -0.54 1.48 -3.24 - - - 2.81 3.79 0.19 - -3.29 -3.24 1.25 -0.19 -1.72 -2.08
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
1.22 1.68 - - - 0.59 - 2.73 0.72 - - - - - -0.36 - - 0.24 3.42 - - - - - - 1.53 - - - 0.15 - -
-0.48 -0.58 -0.8 0.09 -0.04 0.32 0.32 0.06 0.36 0.18 -0.04 0.39 -3.4 -3.81 0.59 -2.92 0.06 1.0 0.61 1.03 -2.29 -4.03 -1.48 -2.1 -2.77 -0.08 0.7 0.1 0.01 -0.29 1.02 1.52
-0.62 -0.73 -0.9 -0.93 0.25 0.14 0.76 0.78 0.58 0.48 -0.02 0.17 -0.58 -1.18 -0.3 0.46 -0.05 -0.14 0.67 -0.53 - - -0.19 -0.16 -2.55 -0.03 0.53 0.58 0.15 0.36 0.84 0.57
- - - - - - - - - 0.62 - - 0.55 - - - 2.1 - 1.39 - - - 2.06 1.9 - - - - 3.42 1.81 -4.73 -
-1.23 1.71 - 1.02 - - 0.15 - - 1.04 0.37 0.07 - - - - 1.25 - 1.76 - - - 2.23 - - - - - 1.19 0.22 2.52 0.14
- - - - - - - - - - - - - - - - - - - - - - - 3.97 - - - - - - - 4.03
-1.78 -0.78 -0.06 0.48 0.63 0.69 -1.07 -2.53 -0.45 -2.18 -1.87 -2.68 0.2 -4.22 -3.34 -3.84 -0.97 -0.59 -1.92 - - - 2.38 3.48 0.3 - -1.37 -0.5 -1.17 0.26 -1.51 -3.24
0.18 -0.81 -0.54 -0.38 -0.48 -0.6 -0.94 -1.47 -1.02 -0.84 -0.31 -0.64 1.55 -1.37 -6.09 -1.18 -0.68 -1.67 -0.24 - - - 0.99 3.41 -1.4 -1.38 -1.45 -1.2 -0.15 1.22 -1.25 -0.62
-0.71 -0.63 -0.17 -0.47 -0.58 -0.54 -0.56 -0.85 -0.39 -0.3 0.06 -0.34 0.51 -3.8 -4.38 -0.47 -3.92 -2.84 -4.91 0.01 -6.34 -5.34 1.89 3.65 -0.68 -1.08 -1.78 -2.07 -0.8 -1.04 -1.32 -1.97
0.26 0.29 -0.16 -0.46 -0.75 -1.11 -1.06 -1.56 -1.09 -0.15 -0.35 -0.02 -0.14 -0.65 -1.45 0.52 0.3 0.36 -0.68 0.58 -2.0 0.11 -1.09 -1.02 -0.88 0.14 -0.2 -0.05 -0.75 -0.08 1.44 2.3
- 0.54 - - - - - - - - 1.53 - - - - - 0.6 - - - - - 2.51 4.14 - - - - 0.54 0.5 - -
- - - - - - - - - - - - - - - - - - 3.38 - - - - 3.46 - - - - 3.41 - - -
-1.06 - - -2.52 - 0.16 0.56 1.45 1.33 0.71 -2.62 0.43 -1.25 - 0.05 -0.56 -1.34 1.42 1.68 - -1.13 - -2.26 -2.47 -0.4 -0.4 1.78 1.77 1.12 -0.81 - -
-2.56 -5.13 -0.88 -0.54 - -1.77 -1.8 -2.11 -3.87 -1.75 -2.74 0.04 - -0.18 0.82 -0.43 -0.08 2.28 3.53 - - -3.98 -0.41 0.23 - -0.65 -2.27 -0.87 0.29 -0.06 0.02 -0.15
0.01 0.25 0.74 0.42 0.43 0.16 -0.28 -0.49 -0.52 -0.41 0.13 -0.09 -0.48 -1.62 -2.25 -0.47 -2.14 -2.47 -1.68 -6.24 -5.77 -2.39 0.78 3.02 -0.44 -0.5 0.04 -0.18 -0.58 0.04 -0.41 -0.42
- - - 1.36 - - - - - - - - - - 1.43 - 1.36 2.04 2.35 - - - 2.31 - - - - - 1.4 - - 2.89
- - - - - - - 3.45 - - - - - - 1.57 - 2.41 - - - - - - - - - 3.68 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-3.33 -1.01 -3.34 - - -2.08 -1.7 -1.47 -1.46 -2.58 -4.67 - - -4.76 - - -2.24 1.63 - - - - 2.16 4.17 -0.62 -1.96 -0.93 -0.79 -0.87 -2.24 -1.61 -0.15
- - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - -
0.84 - - - - - - 0.13 - - - 1.46 1.66 - 0.82 - - - 1.53 - - - 0.48 - - - - 2.77 3.07 0.96 - -
- - - - - 2.8 - - - 2.51 - - 3.51 - - - - - 2.99 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
- - - - - - - 2.24 - - - - - - - - 2.68 - 2.55 - - - - - - 2.65 - - - 1.58 1.56 1.5
-0.35 -1.25 -2.21 -3.44 1.19 0.48 -2.51 1.97 -0.86 -0.92 -1.02 -0.94 - 0.9 - -3.02 -2.32 2.45 0.85 - - - 0.81 0.7 - 1.98 0.47 -1.14 -0.86 -0.73 -0.77 -1.84
0.19 -0.09 -0.27 0.02 -0.37 0.93 0.5 -0.01 -0.19 0.48 -0.53 -0.48 -0.85 -1.88 -3.67 -3.1 -2.75 0.51 0.95 -2.63 - -0.34 1.53 2.58 -0.23 -0.66 -0.12 -0.22 -1.35 -0.52 -1.67 -1.72
- - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - -
-1.12 -6.34 -30.21 -2.67 -0.22 -0.92 -20.07 0.14 -1.01 -25.06 -0.77 -23.05 - - -4.87 -2.78 -2.42 - -2.44 - -1.01 - 2.77 3.91 0.08 0.84 -23.32 - -1.29 -0.32 -1.94 -0.7
- - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - -
-1.22 -0.79 -0.31 0.18 0.28 0.2 0.3 0.07 -0.3 -1.07 -1.22 -1.26 -2.3 -1.72 -1.24 -2.14 -1.21 -2.15 -2.09 -2.55 -3.34 -2.03 2.2 3.18 -0.76 0.1 -0.09 -0.33 -0.6 -0.02 -1.24 -0.75
1.09 - - - - - - 2.94 1.28 - - - - - - - - - 2.84 - - - - - - 2.57 1.92 - 0.53 - 0.5 -
- - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - -
-0.12 0.26 0.03 -0.58 -0.76 -1.05 -0.53 -0.95 -0.39 -0.64 -0.43 -0.16 -3.9 -0.07 -1.84 0.56 -1.08 0.04 -1.66 - - - 1.5 2.81 0.75 -2.24 -1.61 -1.12 0.79 1.29 -0.62 -0.15
- - - 2.23 - - - - - - - - - - - - 2.99 - 1.9 - - - - 1.85 - - - - 3.02 1.98 - -
- - - - - - - - - - - - - - - - - 1.84 - - - - 2.66 4.31 - - - - - 1.2 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.25 -1.79 -2.24 -1.57 -0.44 -1.38 -1.79 -1.56 -1.4 -2.03 -1.24 -1.84 1.36 -1.06 -1.71 0.66 -1.33 -1.28 -1.17 -1.0 -4.23 -1.0 0.92 2.68 -1.07 -1.8 -0.51 -0.2 -0.76 -0.5 2.4 1.5
- - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - -
0.32 0.13 0.19 0.14 -0.06 0.4 0.65 1.52 0.8 0.64 0.55 0.02 -3.44 -1.64 -3.89 -0.72 -1.24 0.23 -1.56 -1.05 -2.62 2.25 -2.01 -2.19 -1.15 1.41 -1.09 -1.19 -0.7 -2.39 -0.14 -1.83
- - - - - - - - - - - - - - 1.16 - - 2.98 2.87 - - - - - - - - - 2.83 2.89 - -
- - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 4.46 - - - - 3.33 - - -
- - - - - - - - - - - - - - - - - - 2.67 - - - - 4.28 - - - - - - 2.65 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0
-1.49 - - -1.04 -0.64 -0.47 - -0.93 - -0.16 - 0.24 -0.37 - 0.36 0.4 1.11 - 2.35 - - - -0.38 1.83 - 1.82 - - 1.54 2.3 -0.21 -
- - -0.08 -2.22 - - - -1.11 - - - -1.93 -1.6 -1.51 -2.4 0.09 - -1.53 1.83 - - - 1.87 4.18 - 0.41 - - - -0.73 -1.76 -1.83
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - 2.06 - 2.82 - 3.81 - - - - 2.75 - - - - - - - -
-1.08 -2.73 -2.94 -1.35 -3.49 -1.57 -0.23 -1.34 -0.01 -1.52 -0.22 -1.36 0.09 -0.03 0.24 -0.67 -1.84 -1.53 0.58 -3.35 1.8 0.04 1.88 2.79 -1.49 -0.54 -0.67 - -1.01 0.5 -0.09 -0.15
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 2.57 3.19 2.42 - - - 2.57 - - - - - - 2.48 - -
-1.75 - - 0.51 - 0.87 - 2.75 0.16 1.21 0.23 0.87 0.56 - -1.33 - -0.6 - 1.4 - - - 0.35 -0.52 - 0.4 - 2.63 - - -0.62 -
- - - - - - 1.35 - 0.14 - - - - - - - - - 0.51 - - - 2.05 4.21 - - - - 0.54 - 0.51 0.45
- - - - - - - - - - - - - - - - - - 3.97 - - - - - - - - - 4.03 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - -
0.57 0.42 - 1.6 - - - - - 0.17 0.27 0.49 0.74 - 1.26 - - - - - - - - - 2.63 - - - - 2.35 - 2.82
- 0.31 - 0.01 - - - 3.98 - - -0.15 - - -0.76 - - - - - - - - - -0.99 - 2.59 - - 0.05 1.42 1.17 -
- - - - - - -0.17 2.56 - - - -0.15 2.16 0.97 - 1.95 -0.29 0.53 1.29 - - - - 0.74 - - 1.38 - - 0.77 0.77 0.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - 1.21 1.95 - - - 1.28 - - 0.64 - - 1.95 2.83 - - - - 1.3 - - 2.58 - - 1.28 - -
-1.44 -1.28 0.46 0.02 -1.96 -0.81 -0.0 0.06 -0.09 -0.71 -3.6 1.16 - - - - -1.17 - 1.27 - -1.14 - 1.65 3.32 -1.38 -1.33 -0.57 -1.21 0.37 0.35 -0.57 -0.99
- - - - - - - 3.76 - - - - - - - - - - - - - - - - - - - - 4.21 - - -
1.88 - - -0.01 - 1.61 - 3.83 - - - -0.36 - - - - - 0.88 - - - - - - - 2.4 1.12 - - - - -
- 0.31 - 0.01 - - - 3.98 - - -0.15 - - -0.76 - - - - - - - - - -0.99 - 2.59 - - 0.05 1.42 1.17 -
- - - - - - - - - - - - - - - - - - - - - - 2.61 4.69 - - - - - - - -
- - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 4.05 - - 3.95 - - - - - - - - - - - - - - - - - - - - - - - -
0.86 0.93 0.56 0.61 0.59 0.81 -0.62 2.75 -1.72 - 1.74 -0.53 - -0.45 1.49 - - -1.37 - - - - - - - 0.0 1.6 0.85 - -1.68 -2.02 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
-2.18 - - -1.55 - 1.02 2.4 2.76 0.26 0.53 0.98 - - - -0.35 - 0.07 - - - - - -0.85 -1.06 - - 1.96 2.19 0.5 - - -
-3.59 - - - - -1.5 - - - - - - 0.36 -0.21 0.12 0.86 -3.36 -0.75 1.73 - - - 1.88 3.79 1.17 - -1.15 -1.16 -1.43 -1.36 -0.81 -0.88
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0
- - - - - - - 3.85 - - - 4.14 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0
-0.78 - - 0.49 1.44 -0.97 - 4.04 - -1.65 3.08 0.4 - - - - - - - - - - - - - - -2.15 - - - - -
-1.9 -1.35 -1.47 -1.59 -1.81 -1.59 -1.72 -2.01 -1.91 -2.03 -1.81 -2.03 -0.34 0.64 -2.18 0.76 -1.41 -0.26 1.24 -8.28 -2.03 -3.72 2.5 3.45 -1.49 -1.66 -2.68 -2.24 -0.52 -0.64 -0.51 -0.61
-0.89 -0.42 -0.03 0.18 0.49 0.53 0.59 0.14 -0.1 -0.99 -0.78 -1.09 -1.84 -1.73 -1.21 -1.59 -1.24 -1.24 -1.62 -2.16 -2.33 -1.24 1.92 2.85 -0.51 0.17 -0.08 -0.0 -0.61 -0.2 -1.1 -0.95
- - - - - - - - - - - - - - - - - 3.31 1.48 - - - 1.64 - - - - - 4.01 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - -
- - - - - - - 3.83 - - - - - - - - - - - - - - - - - - - - - - - 4.16
- - - - - - - - - - - - 1.24 - 1.74 - 1.32 - - - - - 1.11 1.14 - - - - 3.32 2.84 - 1.2
-1.76 -1.98 -3.17 -0.55 0.07 -1.12 0.4 0.24 -0.55 -0.39 -0.33 -0.75 1.87 -0.91 -0.13 -1.62 - - -2.23 - -1.47 - 0.82 2.95 -0.71 -1.76 0.17 2.05 -1.23 -0.79 -1.02 -0.56
- - - - - - - - - - - - 1.47 - - - - 2.2 3.38 - - - - 1.3 - - - - 2.57 1.51 1.57 -
- - - - - - - - - - - - - - - - - - - - - - - 3.87 - - - - 4.12 - - -
0.29 -2.36 -0.98 -0.9 -1.2 1.02 -1.01 2.55 -0.69 -3.58 0.25 -1.73 - -2.4 -1.78 1.06 -0.82 -1.52 -1.2 - - - -2.06 -1.19 -1.12 2.53 0.04 - -0.49 -1.18 1.96 0.72
- - - - - - - - - - - - - - - - 2.93 - 2.76 - - - - - - - 3.33 - 2.92 - - -
- - - - - - - - - - - - - - - - - - 2.94 - - - 1.86 3.61 - - - - 3.09 - - -
- - - - - - - - - - - - - - - - - - 4.03 - - - - 3.97 - - - - - - - -
- - - - - - - - - - - - - - - - - - 3.93 - - - - - - - - - - 4.07 - -
0.44 0.11 -0.53 -0.09 -0.61 0.64 0.8 2.15 1.34 1.07 0.75 -0.01 -3.81 -2.67 -2.97 -0.61 -0.37 0.38 -0.8 -3.73 -0.77 - -1.75 -1.3 - 1.93 -0.85 -0.37 -0.3 -2.51 -0.16 -2.44
0.44 0.11 -0.53 -0.09 -0.61 0.64 0.8 2.15 1.34 1.07 0.75 -0.01 -3.81 -2.67 -2.97 -0.61 -0.37 0.38 -0.8 -3.73 -0.77 - -1.75 -1.3 - 1.93 -0.85 -0.37 -0.3 -2.51 -0.16 -2.44
0.44 0.11 -0.53 -0.09 -0.61 0.64 0.8 2.15 1.34 1.07 0.75 -0.01 -3.81 -2.67 -2.97 -0.61 -0.37 0.38 -0.8 -3.73 -0.77 - -1.75 -1.3 - 1.93 -0.85 -0.37 -0.3 -2.51 -0.16 -2.44
0.44 0.11 -0.53 -0.09 -0.61 0.64 0.8 2.15 1.34 1.07 0.75 -0.01 -3.81 -2.67 -2.97 -0.61 -0.37 0.38 -0.8 -3.73 -0.77 - -1.75 -1.3 - 1.93 -0.85 -0.37 -0.3 -2.51 -0.16 -2.44

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.