Heatmap: Cluster_101 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo106275	-0.09	-0.22	-0.11	-0.16	-0.38	-0.2	0.03	-0.2	-0.22	-0.12	0.29	0.29	0.82	-1.05	1.11	0.77	0.46	1.15	0.03	-	-	-6.18	-0.32	0.11	-7.25	0.17	-0.55	0.04	0.96	0.88	-0.48	-0.55
Smo108987	-0.28	-0.55	-0.73	-0.37	-0.6	-0.41	-0.18	-0.52	0.0	0.13	0.08	0.04	-0.59	-1.92	1.26	0.14	0.64	1.81	-1.38	-2.73	-6.49	-1.49	1.18	1.09	-	-3.14	-1.74	-3.27	0.99	1.24	0.12	0.25
Smo110731	-0.8	-0.71	-0.51	-0.34	-0.21	0.03	-0.06	0.29	0.39	0.25	0.31	-0.07	0.45	0.88	0.79	0.23	-0.3	1.01	-0.1	-0.89	-1.0	0.17	0.15	0.37	-1.64	0.12	-0.37	-0.72	-0.33	-0.25	-0.28	-0.18
Smo12319	0.26	-0.33	-0.55	-0.62	-0.38	-0.25	-1.02	-0.77	-0.47	-0.59	0.01	-0.32	0.2	0.79	1.76	0.53	0.08	0.54	1.07	-5.11	-1.82	-2.31	0.31	0.48	-4.34	-1.84	-1.52	-1.14	0.35	0.89	0.51	0.73
Smo151769	0.22	-0.23	-0.73	0.05	0.48	-0.02	-0.03	-0.24	-0.16	-0.15	0.03	-0.57	0.25	0.65	1.8	0.12	-0.06	-0.39	0.72	-2.99	-5.87	-0.41	-0.05	0.06	-5.38	-0.88	0.06	-0.88	-0.21	0.17	0.52	0.54
Smo17238	-1.47	-1.13	-0.62	-0.09	0.27	0.42	0.56	0.24	0.25	-0.13	-0.29	-0.97	0.98	1.54	1.05	0.45	-0.05	1.63	-1.06	-2.61	-2.05	-1.07	0.12	0.14	-2.86	-2.19	-1.25	-1.47	-0.18	0.08	-0.28	0.18
Smo173700	0.47	-0.02	0.23	-0.01	0.13	0.23	-0.26	0.06	0.47	0.49	0.57	0.13	0.39	1.11	0.45	1.04	-0.1	0.94	-1.03	-2.41	-0.64	-4.4	-0.46	-0.62	-0.53	-1.54	-1.2	-0.73	-0.22	0.09	-0.59	-0.3
Smo18758	0.15	0.15	-0.06	0.19	0.13	0.19	-0.05	0.55	-0.63	0.04	-0.27	-0.03	0.91	-0.89	-1.24	0.56	0.39	1.18	0.7	-	-	-	0.6	0.56	-	-1.24	-1.08	-1.58	0.81	0.83	0.15	0.2
Smo18765	-0.35	-0.86	-1.07	-0.45	-1.08	-0.41	-0.46	-0.62	-0.09	0.01	-0.03	-0.11	0.58	0.51	1.04	0.51	0.16	1.44	0.31	-1.51	-1.16	-1.14	0.27	0.28	-1.7	-0.43	-1.1	-0.75	0.32	0.26	0.56	0.88
Smo19457	-	-	0.85	-	-	-	-	-	-	-	-	-	-0.44	-	-	0.76	1.11	3.45	0.46	-	-	-	1.52	0.98	-	-	-	-	1.23	-0.4	2.21	-0.46
Smo235487	-4.05	-5.48	-3.89	-1.88	-1.06	0.15	0.32	-0.52	-1.38	-1.17	-2.85	-3.15	0.58	-1.17	-2.15	1.15	-0.45	2.16	1.72	-4.23	-4.2	-	1.18	0.31	0.35	-1.62	0.59	0.12	0.61	0.08	0.62	1.12
Smo270651	-0.24	-0.12	-0.27	0.02	-0.16	-0.02	-0.17	-0.41	-0.11	-0.36	-0.23	-0.21	-0.1	0.83	0.23	0.24	0.2	0.39	0.06	-0.6	-0.07	0.67	0.63	0.52	-1.8	-1.45	-0.41	-0.53	0.25	0.2	0.08	0.28
Smo27523	0.12	-2.02	-2.65	-0.65	0.37	-1.47	-1.66	-0.4	-0.67	0.46	-0.37	-0.44	0.9	0.34	1.64	0.62	0.13	1.46	1.52	0.52	-2.52	-2.3	-0.68	0.6	-1.8	-1.16	-	-	-0.56	-0.82	0.76	0.59
Smo28201	-0.64	-0.49	-0.66	-0.41	-0.12	-0.2	-0.35	-0.13	-0.83	-0.47	-0.56	-0.6	0.04	-1.01	-0.19	0.43	0.55	0.97	0.86	-3.24	-1.76	-0.26	0.63	0.48	-0.15	-0.2	0.28	0.43	0.38	0.4	0.69	0.5
Smo28310	-0.92	-0.58	-0.42	-0.31	0.24	-0.31	-0.25	0.31	-0.15	-0.49	-0.53	-0.69	0.75	-0.58	-0.7	0.93	0.6	1.67	0.47	-	-	-3.89	0.67	0.61	-3.15	-0.86	-0.93	-1.21	0.76	0.75	0.64	0.64
Smo37441	-0.35	0.29	-0.67	0.06	-0.27	-0.17	0.13	-0.22	-0.12	0.16	-0.34	-0.09	0.75	-0.58	1.02	1.09	0.48	0.47	1.44	-	-4.35	-	0.21	0.0	-	0.17	-1.62	-1.61	0.83	0.74	-0.31	-0.67
Smo38281	0.26	0.23	0.23	0.39	0.18	0.54	0.59	-0.03	0.69	0.53	0.38	0.41	-0.88	0.03	1.12	-0.95	0.85	1.15	-1.42	-2.59	-4.82	-1.4	-0.43	-0.49	-6.11	-4.08	-3.24	-3.84	0.45	0.46	0.35	0.53
Smo402537	-1.76	0.61	-1.62	-0.87	-0.73	-0.11	-0.28	-1.19	-2.24	-2.3	-2.16	-2.13	-0.85	0.76	-0.24	0.71	1.11	1.67	1.47	-	-2.2	-	2.06	0.62	-2.48	-1.19	-0.67	0.28	0.51	1.18	-1.12	-1.84
Smo403193	0.02	-0.35	0.56	0.12	0.19	0.09	0.18	0.54	0.11	0.09	-0.17	0.05	0.29	-0.88	-0.97	0.4	0.56	0.43	0.28	-4.03	-2.86	-3.07	0.62	0.73	-2.04	-0.97	-0.81	-0.28	0.66	0.93	0.02	-0.01
Smo403912	-1.07	-0.67	-0.16	-0.74	1.16	-0.1	-0.77	-0.15	-2.44	-1.86	-0.24	-1.06	0.8	-1.05	-0.43	0.92	0.84	1.7	1.01	-	-	-	0.74	0.56	-	-2.7	-1.39	-2.09	0.89	0.76	0.81	0.85
Smo406067	-1.3	-1.11	-0.69	-0.94	0.27	-0.85	-1.4	-0.75	-0.32	-0.91	-0.75	-1.12	-5.73	-7.53	-	-6.69	0.09	2.14	-2.56	-4.27	-0.31	-5.5	2.73	2.37	-0.39	-2.61	-2.48	-1.79	0.1	0.5	0.54	0.25
Smo407674	-0.1	0.72	0.93	0.93	0.93	1.19	0.28	-0.22	0.07	-0.33	-0.36	-0.49	-0.3	-2.77	-0.49	-1.21	1.09	1.64	-2.37	-0.78	-1.71	0.71	-0.71	-1.99	-2.63	-2.72	-1.48	-0.89	0.02	0.42	-0.18	-0.65
Smo408679	-1.35	-0.83	-0.26	0.73	1.26	0.43	0.11	-0.15	-0.82	-0.85	-0.81	-1.97	1.34	-1.07	1.22	0.2	0.66	1.14	-0.25	-0.15	-4.2	-1.98	1.03	1.34	-2.48	-3.42	-2.0	-3.3	0.07	0.16	-0.62	-0.9
Smo412703	-6.65	-6.06	-5.68	-	-6.41	-	-7.31	-4.51	-	-4.4	-	-6.73	-4.97	-8.24	-	-6.36	1.65	1.73	-0.8	-	-	-	3.15	2.46	-1.57	-2.81	-6.01	-3.95	0.96	1.43	1.39	1.35
Smo413618	-0.94	-0.44	-0.82	-0.73	-0.97	-0.72	-1.36	-1.3	-1.23	-0.78	-1.11	-0.71	-1.68	-2.19	-2.35	-1.68	1.36	1.14	-0.8	-3.96	-2.29	-0.76	2.37	1.62	-1.33	-1.61	-1.85	-2.11	1.01	1.16	1.17	1.23
Smo414555	-0.02	0.14	-0.74	0.43	1.14	-0.22	0.36	-0.26	0.15	-0.58	0.55	-0.55	-0.05	-1.95	-0.98	0.09	1.01	1.46	0.31	-	-	-0.61	0.22	0.16	-1.97	0.82	-0.23	0.03	0.09	0.55	-1.66	-1.44
Smo417581	-0.33	0.27	0.26	0.07	0.05	0.15	-1.26	-0.65	-0.34	-0.05	0.13	-0.13	-0.39	-0.04	1.11	0.16	0.29	1.67	-1.54	-0.94	-2.62	0.05	0.48	-0.15	-2.63	-3.36	-0.76	-0.62	0.29	0.81	0.45	0.18
Smo423947	-0.72	-1.01	-0.13	-0.53	-1.08	-0.46	-0.55	-0.3	-0.25	0.02	-0.2	-0.11	0.95	-1.31	-0.58	0.67	0.38	1.27	0.77	-0.63	-0.82	-0.45	0.43	0.34	-1.04	-0.02	-0.74	-0.17	0.45	0.58	0.37	0.32
Smo424757	0.33	0.59	0.79	0.65	0.57	0.53	0.45	-0.34	0.19	0.24	0.26	0.24	-1.86	-0.3	1.34	-2.52	1.52	1.72	-2.17	-6.75	-4.6	-4.81	-2.98	-3.69	-3.33	-2.68	-1.89	-1.33	0.57	0.61	-0.03	-0.35
Smo426835	-0.65	-0.13	-1.06	-0.7	-0.9	0.33	-0.38	0.17	-0.35	-0.46	0.76	-0.87	0.26	0.22	1.55	0.96	0.44	-1.48	1.55	-	-	-	-0.24	-2.13	-0.87	0.15	0.24	0.55	0.72	0.8	-0.67	-0.68
Smo4314	-20.11	-31.95	-7.65	-	-1.17	-1.18	-3.55	-3.86	-4.69	-	-	-5.97	1.33	-0.61	2.82	0.98	-6.63	2.86	1.72	-	-	-	-4.85	-1.48	-3.69	2.69	-1.05	-2.93	-1.87	-2.94	-3.09	-3.46
Smo439537	0.29	0.06	0.1	-0.1	-0.23	-0.24	-0.44	-0.53	-0.5	-0.5	-0.05	-0.01	0.95	0.36	-0.77	0.33	0.72	1.11	-0.12	-3.68	-2.08	-5.06	0.37	-0.08	-3.11	1.01	-0.01	0.51	0.62	0.57	-0.53	-0.73
Smo440674	-0.19	0.08	-0.14	-0.07	-0.22	-0.08	-0.02	-0.44	-0.22	-0.13	-0.24	-0.28	0.88	0.16	-0.16	1.4	1.38	1.2	-0.82	-5.71	-6.23	-5.25	0.15	0.22	-6.4	-2.51	-2.57	-2.04	0.98	1.13	0.4	-0.22
Smo443266	-0.85	0.25	-0.28	-0.22	-0.3	0.11	-0.84	-0.92	-0.61	-0.32	-0.71	-0.5	-6.85	-	-12.54	-8.15	1.43	1.75	-1.36	-	-3.03	-	2.04	0.99	0.03	-2.2	-5.39	-3.39	1.06	1.0	1.03	1.42
Smo444337	0.24	0.45	0.43	0.15	0.34	0.57	0.83	0.11	0.72	0.64	0.65	0.41	0.26	0.88	0.83	0.09	1.17	1.0	-2.63	-6.05	-	-5.0	-1.01	-1.87	-6.54	-2.6	-2.25	-1.84	0.23	0.34	-0.73	-1.1
Smo444407	-2.5	-1.1	-1.3	-1.27	-2.22	-1.6	-1.86	-2.2	-1.49	-3.15	-2.8	-2.19	-5.87	-6.57	-4.94	-4.81	0.36	2.57	0.61	-1.28	-4.84	-	2.91	2.58	-4.71	-5.13	-3.22	-2.95	0.32	0.84	0.93	-0.6
Smo444409	-0.87	-0.75	-0.23	-0.5	-0.01	-0.12	0.39	-0.35	0.27	-0.29	-0.25	-0.69	0.42	0.25	0.87	0.58	0.48	0.47	0.16	-2.54	-2.0	0.5	0.54	0.66	-4.51	-0.96	-0.18	-0.27	0.4	0.19	0.15	0.44
Smo47303	0.01	-0.35	-0.08	-0.04	0.57	-1.14	-0.78	-0.24	-0.11	-0.43	-0.51	-0.49	0.51	-1.64	0.03	0.73	0.79	1.54	0.42	-	-2.08	-2.11	0.15	0.5	-1.1	0.12	-0.56	0.57	0.71	0.55	-0.31	-0.31
Smo59296	0.02	0.11	0.02	0.26	-0.02	0.13	0.26	0.0	-0.25	-0.28	-0.48	-0.31	0.08	0.6	1.03	0.93	0.17	1.49	-0.11	-0.43	-1.27	-0.49	-0.56	-0.2	-2.93	-0.46	-0.46	-0.74	-0.28	0.12	-0.45	-0.76
Smo6879	-1.08	-0.71	-1.02	-0.5	-0.98	0.78	-0.72	0.28	-0.05	-0.62	-1.5	-1.74	-0.69	-1.68	1.3	0.84	0.43	0.72	1.16	-	-	-	1.06	0.69	-0.84	0.65	0.46	0.77	0.66	0.73	-1.52	-0.94
Smo69627	-0.7	-4.13	-2.79	-1.25	-1.93	-1.92	-0.31	-0.39	-0.89	-0.02	0.14	-0.54	0.33	0.7	1.07	1.04	1.33	1.6	-0.12	-1.52	-	-	-0.61	-0.34	-1.17	-	-0.98	-	1.56	1.28	0.99	0.81
Smo69848	-0.08	0.07	-0.23	-0.06	0.39	0.2	0.18	0.19	0.27	0.02	0.23	-0.01	0.25	0.75	0.42	0.03	-0.37	0.91	-0.05	-1.56	-2.41	0.94	-0.02	-0.13	-4.69	-0.46	0.09	-0.18	-0.5	-0.56	-0.33	-0.01
Smo71653	-0.99	-0.25	0.27	-6.5	0.61	0.41	-0.69	-0.59	0.65	-1.04	0.64	-3.71	0.37	1.49	1.98	-0.3	0.54	1.69	-1.73	0.01	-1.69	0.79	-0.01	0.38	-0.26	-4.03	-1.83	-22.23	-2.35	-2.51	-2.13	-0.61
Smo72367	-0.4	-0.97	-1.11	-0.37	-0.79	-0.33	-0.31	-0.49	-0.07	-0.39	-0.63	-0.54	0.43	0.65	1.4	0.53	0.57	0.81	0.72	-	-2.87	0.28	0.56	0.59	-2.07	-0.81	-0.75	-0.15	0.34	0.5	0.04	0.42
Smo72757	0.01	0.11	-0.68	-0.16	-0.27	-0.21	-0.69	-0.51	-0.78	-0.7	-0.63	-0.37	-0.23	-0.3	0.44	0.47	1.03	1.84	0.41	-	-	-	0.87	0.55	-2.19	-1.45	-1.54	-0.86	1.19	1.11	0.4	-0.2
Smo72886	-0.18	0.26	0.01	-0.04	0.62	-0.25	0.3	-0.13	0.08	0.24	0.23	-0.13	0.38	-0.44	0.81	0.39	0.32	0.79	-0.16	-4.2	-2.03	-1.09	0.41	0.2	-0.51	-1.32	-0.58	-1.0	0.21	0.35	0.07	0.15
Smo73489	-1.31	-2.18	-1.26	-0.94	-0.62	-0.96	-0.65	-0.21	-0.95	-1.23	-1.3	-0.95	-0.75	-1.14	-0.94	-0.46	0.47	1.15	0.97	-1.23	-2.3	-1.15	1.14	1.18	-0.13	0.26	0.78	0.65	0.7	0.63	0.85	1.09
Smo7721	-0.86	-0.93	-0.57	-0.41	-0.47	-0.4	-0.75	-0.77	-0.27	-0.55	0.37	-0.55	0.59	0.4	1.55	0.44	0.24	1.64	0.14	-0.05	-2.59	-1.63	0.06	0.09	-2.36	-0.74	0.04	0.14	0.21	0.16	-0.08	0.21
Smo78322	-0.75	-0.7	-0.4	-0.45	-0.37	-0.29	-0.31	-0.25	-0.14	-0.29	-0.22	-0.72	0.59	0.83	0.78	0.38	0.36	1.56	0.12	-0.13	-1.68	-0.34	0.25	-0.11	-1.43	-1.09	-0.91	-1.05	0.39	0.23	0.35	0.59
Smo7911	-1.11	-0.37	-0.58	-0.56	0.06	-0.11	-0.67	-1.04	-0.75	-0.94	-1.05	-0.48	0.39	-0.46	0.83	0.44	0.96	0.72	0.88	-3.34	-1.35	-1.58	1.25	1.15	0.54	0.14	-1.44	-2.9	0.54	0.61	-0.16	0.08
Smo80116	0.06	0.46	0.43	0.31	0.42	0.36	0.52	0.01	0.42	0.53	0.52	0.35	0.26	0.61	0.04	-0.13	0.54	0.54	-1.03	-1.36	-0.99	-0.06	0.01	-0.64	-2.54	-1.32	-1.51	-1.21	-0.09	0.14	-0.45	-0.43
Smo80215	-	-	-0.42	-0.55	-	0.01	-	-	-	-	-	-	1.48	-	2.52	-	0.36	2.53	2.17	1.02	-	-	-	-0.7	-	-	-	-	1.81	1.03	-0.55	-0.62
Smo80593	-0.16	-0.39	-0.15	0.03	0.24	0.1	-0.34	0.25	-0.04	-0.1	-0.06	-0.3	0.25	0.19	0.72	0.3	-0.12	0.1	0.13	-1.24	-1.03	0.46	0.01	-0.08	-0.85	0.51	0.3	0.11	0.04	0.07	-0.53	-0.15
Smo8180	-1.01	-0.76	-0.25	-0.44	0.14	-0.23	-0.02	0.17	-0.07	-0.3	0.07	-0.85	0.21	-0.52	1.14	0.19	0.17	0.87	0.32	-2.67	-3.49	-2.46	0.09	0.18	-0.35	0.37	0.41	0.86	0.49	0.52	-0.15	-0.16
Smo84611	-0.62	-0.04	0.43	-0.45	0.18	-0.59	-0.77	-0.55	-0.63	-0.75	-0.31	-0.46	0.02	-0.99	-1.48	0.42	0.91	1.96	1.19	-6.65	-	-	0.98	0.71	-	-1.27	-0.75	-0.03	0.64	0.84	0.19	0.12
Smo84637	-0.15	-0.19	-0.1	0.08	-0.01	0.13	-0.14	-0.22	-0.0	-0.04	-0.12	-0.01	0.57	0.9	-0.29	0.81	-0.28	0.34	0.43	-0.69	-0.43	-0.56	0.47	0.56	-0.81	-0.92	-0.95	-1.09	0.12	0.12	-0.13	0.09
Smo8800	-3.11	-	-0.98	-2.1	0.63	-1.53	-1.73	-1.88	-1.67	-0.3	-	-	-0.61	-	-0.71	2.02	0.21	2.2	1.28	-	-	-	1.51	1.94	-	-	-	-	0.76	0.97	1.11	0.66
Smo89261	-0.37	-0.29	-0.12	-0.16	-0.12	-0.07	-0.28	-0.32	-0.1	-0.2	-0.21	-0.48	0.39	0.56	0.6	0.46	0.32	0.66	0.4	-0.76	0.15	-0.26	0.52	0.58	-1.43	-1.12	-1.16	-1.22	0.23	0.19	0.17	0.35
Smo89750	-0.6	-0.5	-0.65	-0.7	-0.59	-0.4	-0.59	-0.53	-0.25	-0.14	-0.16	-0.28	0.35	0.86	1.09	0.13	-0.11	0.8	0.06	-0.72	-1.0	0.6	0.08	0.21	-2.02	0.31	0.3	0.22	0.01	-0.04	-0.01	0.51
Smo90525	-0.5	-0.89	-0.62	-0.55	-1.11	-0.58	-0.45	-0.74	-0.56	-0.8	-0.42	-0.63	-0.27	0.25	1.17	-0.14	-0.36	0.92	0.16	0.42	-0.51	0.72	-0.04	0.19	-2.29	1.02	0.84	0.69	-0.06	0.0	-0.14	0.05
Smo92324	-0.36	-0.46	-1.38	-1.01	-1.53	-0.25	-0.98	-0.23	0.26	-0.27	-0.22	0.13	-0.73	-2.22	1.22	0.28	0.37	0.09	1.65	-	-	-	0.85	0.35	-	0.77	-0.5	-2.2	1.5	1.58	-0.56	0.05
Smo98142	0.43	0.15	-0.03	-0.07	0.09	-0.02	-0.37	-0.35	-0.13	0.07	0.4	0.23	0.33	0.26	-0.44	0.39	0.46	0.34	0.31	-0.9	-0.25	-2.21	-0.01	-0.22	-0.27	0.08	-0.45	-0.5	0.25	0.3	-0.1	0.04
Smo99286	-0.11	0.18	0.02	-0.19	-0.17	-0.24	-0.35	-0.12	-0.01	0.17	0.18	0.13	0.21	-0.91	-1.63	0.23	0.26	1.26	0.32	-1.69	-4.39	-0.92	0.79	0.62	-1.94	-0.24	-0.74	-0.45	0.44	0.44	0.5	0.61

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.