Heatmap: Cluster_37 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - 1.62 - - - - 2.71 - - - - 1.45 1.43 - - 3.43 - 2.62 - - -
-1.01 -1.64 -1.65 -2.27 -5.23 -2.28 -3.35 -1.07 -3.72 -3.06 -2.29 -2.59 -1.11 -2.7 - 0.37 -1.44 -2.43 0.23 -3.16 0.46 - 0.09 1.69 2.17 1.84 2.46 -0.27 0.4 0.39 0.91 -0.08
-0.32 -0.83 -0.26 -0.11 0.01 -0.1 -0.96 -0.03 -0.25 0.17 0.29 -1.15 -3.72 1.73 -3.27 -0.75 -2.48 -1.73 0.44 - - -7.12 -1.54 -1.89 -0.76 2.64 2.57 0.43 -1.96 -2.01 -1.63 -1.67
- - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - -
-0.37 -0.06 -0.76 -0.29 -0.32 0.13 0.41 0.46 0.49 0.58 0.28 0.1 -3.19 -3.08 -3.28 -1.54 -0.28 -0.86 -0.56 -1.62 0.28 -2.14 -1.05 -1.55 1.03 0.93 2.02 1.2 0.04 0.12 -0.39 -0.87
-1.17 -0.56 - - 1.3 0.39 - 0.62 0.2 - -1.18 -0.68 - -0.56 -0.46 -0.54 -0.94 -1.18 1.99 - - - -1.53 -0.02 - 1.56 2.4 2.38 -1.63 - -1.72 -0.11
- - - - - - - - - - - 2.5 - - - 1.26 0.96 - 0.97 - - - - 0.89 - - 3.8 - 1.16 - - 1.02
0.61 0.51 0.39 -0.1 0.03 0.15 0.08 1.03 0.55 0.65 1.0 0.95 - 1.62 -1.53 -5.06 -3.75 - - - -4.3 - -4.71 -6.93 -2.62 2.11 1.76 1.59 -5.32 -4.22 -5.85 -4.92
-0.98 1.56 0.41 -0.51 -0.43 -0.7 -0.46 -0.96 -1.3 -0.72 -0.65 -1.18 -0.64 -0.3 -0.54 0.87 -0.05 0.54 0.52 0.32 0.93 -0.19 0.02 -0.35 -0.21 -0.84 1.64 -0.3 0.19 0.16 -1.55 -2.15
0.77 0.22 -0.84 -0.58 0.77 0.26 -0.55 0.05 -1.0 -0.64 -1.11 -0.58 -1.96 -1.38 -0.75 -0.79 -1.95 -1.15 0.55 -3.66 -1.6 -3.63 -0.83 -0.88 -1.19 1.1 2.82 2.01 -1.09 -1.48 -1.28 -1.03
- - - -2.04 -1.47 - -0.01 0.62 0.98 - 0.31 - - -1.75 -1.1 - -1.52 - - - - - - 1.41 - 1.59 3.11 3.09 0.49 - - -1.6
-0.68 1.24 0.47 -0.06 -0.32 -0.51 -0.08 -0.39 -0.06 -0.22 -0.01 -0.44 -0.14 -1.6 -1.01 0.89 0.32 0.76 -0.01 -5.34 -1.31 -2.04 0.5 0.45 -1.32 0.47 0.76 0.11 0.78 0.76 -0.98 -1.14
0.24 -0.22 -0.65 -0.54 -0.24 0.55 -0.34 0.01 -0.65 -0.35 -1.61 -0.87 -1.54 -0.72 0.07 -0.28 -1.96 -0.88 0.48 -0.09 -2.64 -2.7 -1.42 -1.85 -0.91 1.2 2.61 2.29 -1.14 -1.46 -1.83 -1.46
0.45 -0.19 -0.59 -0.68 -0.06 -0.11 -0.54 -0.42 -1.29 -0.59 -1.32 -0.72 -0.83 -0.62 -1.06 0.84 -1.39 -0.49 0.69 -2.88 -3.95 -2.26 -0.62 -1.0 -0.86 1.36 2.67 1.95 -0.51 -1.11 -1.32 -1.35
-1.0 - -6.24 0.06 -1.86 -1.09 -0.26 -0.11 -0.13 0.32 - -1.9 - - - -2.39 -2.13 -0.71 0.95 - 1.1 -1.23 2.32 2.33 -0.21 -0.07 1.76 - 0.27 -0.33 0.98 -0.35
-0.62 1.48 1.29 -0.27 0.8 0.56 -2.07 -0.26 -2.8 -0.29 -1.29 -1.41 0.32 1.18 -1.0 1.32 -1.18 -0.61 0.08 - - -2.48 -1.09 -0.86 0.91 -1.36 1.89 1.03 -1.24 -0.79 -1.9 -3.29
0.14 -0.55 -0.66 -0.66 0.6 0.71 0.03 -0.4 -1.16 0.15 -1.23 -0.04 -0.67 -2.28 -2.12 0.43 -4.38 -2.84 -1.67 -0.02 -0.75 - -3.65 -2.48 -0.3 1.26 2.84 2.36 -3.03 -3.53 -1.53 -1.99
- - 2.37 - - - - 1.45 1.57 1.54 - 2.28 - - - 0.87 - - - - - - - 0.77 - - - 3.03 - 0.74 - -
-0.07 1.0 -0.92 -0.45 -0.21 -0.27 -0.39 -0.57 -0.65 -1.05 -1.28 -1.36 0.94 1.95 -0.67 1.88 -0.95 0.08 0.64 - - 0.45 -0.25 -0.79 -1.28 -1.03 1.58 -0.05 -1.01 -0.28 -1.51 -2.48
- 2.51 - - - - - - - - - - - - - - - - - - - - - - - 3.8 3.63 - - - - -
-2.5 - - -2.57 - - - -3.36 - -2.77 - - 0.79 -2.76 - - - 1.8 3.07 - 1.93 - 0.6 -1.23 - 0.56 2.36 - 0.72 -0.38 -0.38 1.09
0.36 0.17 -1.6 -0.98 -0.4 -0.93 -0.83 -0.22 -0.54 -0.66 -0.76 -0.29 -2.74 -2.49 -1.71 -0.32 -0.67 -0.87 1.25 - -2.0 - -0.49 -0.87 0.01 2.52 1.97 1.04 0.61 0.06 0.17 -1.21
1.05 1.12 0.57 -0.59 -1.2 -1.79 1.12 0.7 0.14 1.43 0.63 0.66 - 0.73 -0.87 - - - - - - - - - - 1.88 2.23 1.84 - - - -
0.74 -0.38 -0.46 -0.7 0.71 0.04 -0.68 -0.31 -1.37 -0.32 -1.48 -0.47 -1.32 -1.38 -0.88 0.25 -1.34 -0.29 1.08 -7.11 -1.31 -1.92 -0.95 -1.03 -0.7 1.19 2.46 1.87 -0.38 -0.77 -1.09 -1.18
- - - - - - - - - - - - - - - 3.43 - - - - - - - - - - 4.41 - - - - -
0.27 -0.04 0.23 -0.46 0.29 0.58 0.09 0.33 -0.25 -0.14 -0.47 -0.47 -1.75 -1.44 -0.65 -0.72 -0.67 -1.38 0.85 -6.21 - -3.18 -0.3 -0.04 -1.58 1.4 1.99 1.44 -0.13 0.06 -0.88 -0.19
0.78 -1.38 -0.56 -1.22 -0.11 -1.09 0.71 - 1.08 -0.56 -0.08 1.47 -0.99 -1.38 -0.28 -0.96 0.98 -0.46 - - - - 0.02 -1.04 - -0.05 2.06 2.07 -0.26 -1.12 0.43 -0.22
- - 3.78 - - - - - - - - - - - - - - - 4.19 - - - - - - - - - - - - -
-0.77 -0.92 -0.98 -2.35 -0.73 -0.25 0.71 1.46 0.42 0.11 1.22 0.05 - -2.55 -4.46 -2.48 -0.66 -1.4 -0.25 - - - -0.64 -2.63 0.08 1.33 2.1 1.81 0.22 -0.24 0.72 -1.0
- - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - -
2.13 - 2.84 - 1.1 1.72 - - - - - - 1.33 - 0.71 - 1.19 - - - - - - 0.33 - - - - 1.32 -24.04 2.27 -
- - - - - - - - - - - - - 2.51 - - - - - - - - - - - 3.61 3.82 - - - - -
-1.04 - - - - 2.97 - - - - -0.07 - - - - - 0.24 0.78 1.7 - - - - - - 2.73 3.32 - - - - -
0.6 0.58 -0.15 0.04 0.67 0.3 0.19 0.8 1.1 0.24 0.59 0.33 -5.51 1.42 -0.25 - - - -5.65 - -0.96 - - -4.72 - 1.97 2.22 1.38 - - - -
- - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.62 - - - 2.9 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - -
- 2.01 3.37 - 2.86 - - - - - - - - 3.38 - - - - - - - - - - - - - - - - - -
- - 2.23 - - - 1.64 1.23 - 0.97 - - - - - 0.81 1.66 - - - - - 2.38 - - 3.29 - - - - - -
- - - - - - - - - - - - 3.65 - - 2.68 - - - - - - - - - - 3.71 - - - - -
- - - - - - - - -0.13 - - 0.14 - 1.62 -0.45 0.55 0.25 0.92 0.24 - - - 0.2 0.18 - 1.27 3.13 - 0.27 0.26 1.23 1.16
0.02 -0.76 -0.45 -2.03 1.33 1.07 -2.09 -2.52 -1.12 0.48 -1.52 0.13 -0.73 -2.88 -1.88 0.35 -3.34 - -4.14 - - - - -4.53 - 1.35 2.76 3.13 - -3.45 -2.12 -2.51
- - - - - - - - - - - - - 1.65 - - - - 1.76 - - - - - - - 3.17 4.04 - - - -
-0.52 -0.44 -4.14 -1.04 -2.95 -0.74 -2.03 -0.79 -2.21 -0.6 -1.4 -1.15 - -0.02 -5.43 - 0.25 -0.37 0.89 - - - 1.53 -0.14 1.16 0.84 2.52 - 0.77 0.39 1.99 0.48
-1.03 -2.37 -1.48 -2.22 -0.37 -0.62 0.44 0.88 -0.28 -0.1 -0.94 0.1 - -1.41 -1.45 -2.01 0.47 - 1.92 - -1.85 -0.04 0.54 -2.16 -1.13 1.17 1.32 2.22 0.7 0.75 -1.2 -3.25
-0.72 - - - - -0.73 -1.73 - - - 0.04 -1.71 - -1.44 - -1.47 -1.25 0.04 3.47 - - - 1.29 0.72 - - 3.06 - 0.02 -1.44 -1.64 0.81
-1.55 - 0.0 -0.13 - -0.55 -0.76 2.06 -0.7 0.13 - -0.84 - - - - -0.56 0.82 1.89 - - - -0.55 - - - 2.25 3.2 -0.65 -0.67 - -
1.69 0.83 2.68 - - - - - - 0.67 2.62 0.85 - - 0.35 - - - - - - - - - - - 3.29 - - - - -
2.66 - - 1.86 - - - - - - - 2.15 - - - - 2.51 - - - - - - - - - 3.58 - - - - -
- - - - - - - - - - 2.73 - - 1.81 - - - - - - - - - - - - 4.45 - - - - -
2.08 - - - - - - - - - - - - - - - - - - - - - - - - - 4.8 - - - - -
- 0.93 - - - -1.09 - - - - - 0.32 -1.13 3.22 -1.87 1.55 - 0.43 -0.27 - - - -1.13 - - - 3.53 - -1.3 - - -0.32
1.02 - 2.14 - - - - - - - - - 2.69 - - - - - 2.53 - - - - - - - 3.74 - - - - -
- -0.16 1.19 - - - 0.85 -0.3 - 0.74 -0.17 - 0.02 1.59 -0.73 2.07 0.01 - - - - - 0.02 2.18 - - 2.21 - -0.15 - 0.89 -0.16
- - - - - - 2.81 - - - - - - - - - - - 2.9 - - - - - - - 4.13 - - - - -
-1.35 - -2.87 - - -2.48 -2.16 0.06 - - -0.1 -2.29 0.28 2.61 -2.33 1.48 - - 0.45 - - - -2.86 0.17 - 2.96 2.53 0.26 -1.28 - -0.62 -2.8
- - - - - - - - - 1.77 - - - - - - - - - - - - - - - - 3.24 4.26 - - - -
- - - - - - - - - 1.77 - - - - - - - - - - - - - - - - 3.24 4.26 - - - -
- - 3.06 - - 1.98 - - 1.77 - - - 1.94 1.67 1.15 - - 1.85 1.79 - - - - - - - - - - - - -
- 1.19 - -0.22 - - - 1.03 1.76 - - -0.27 - -0.38 -0.85 1.65 - 0.12 0.74 - - - - -0.2 - - 3.68 - - - 0.75 -
- - - - - - - - - - - - - 1.43 - - 0.08 0.63 - - - - 1.14 - - - 3.51 2.47 1.15 1.71 - 1.05
-1.96 0.77 -1.71 -1.38 - - - -0.24 - -0.11 - -1.51 - - - - - - -1.49 - - 0.06 - - 0.7 - 3.07 3.86 -1.68 -1.52 -0.56 -
-0.75 - -2.04 0.59 -1.61 - -0.23 -1.52 - - -0.25 - -1.47 0.82 1.16 0.97 -1.5 - 1.19 0.8 - - - -0.62 0.39 3.15 2.36 - -1.77 -1.62 - -
-1.49 -0.19 -2.13 -0.17 -0.79 -0.69 -1.9 -0.73 -1.84 -0.5 -2.92 -0.57 - - -0.88 -2.57 1.21 - 2.23 - - - -0.13 -0.76 -0.7 0.28 1.94 2.94 -0.43 0.28 -0.76 -0.5
- 1.12 - - - 1.27 - 1.19 - - 1.71 0.85 - - 0.28 - 1.15 - 2.68 - - - - - - 1.54 2.64 - - - 0.11 -
- 1.52 2.91 - - - - - 1.34 - 1.81 - - - - - - - - - - - - - - - - 3.96 - - - -
0.93 - - 0.27 - - - 1.91 -0.09 - 1.07 -0.08 - - -0.72 - 0.16 - 0.05 - - - 0.18 - - - 3.27 2.23 - - 0.01 0.95
-2.76 -0.65 1.53 0.08 1.56 1.2 -1.19 - -0.95 -3.07 - - -2.18 -2.85 - - -3.32 -3.32 0.81 - - - - -2.75 -0.16 2.11 3.02 2.34 -3.38 - - -
- - - - - 2.16 - - - - - - - - - - 2.39 - - - - - - - - - 4.48 - - - - -
-1.31 -0.43 0.37 -0.84 -2.59 -0.65 -2.64 -0.58 -2.28 -1.63 -1.14 0.01 -2.51 -3.37 -1.93 -2.42 0.74 0.39 -0.34 -3.37 -0.26 - 0.65 -0.86 -0.17 0.0 2.19 2.48 0.9 0.53 0.88 -0.53
- - - - - - - - - - - 1.98 - - - - 2.14 - - - - - 2.09 - - - 3.42 - 2.08 2.17 - -
-0.94 -2.27 - 1.0 -2.07 -0.59 -0.27 1.24 1.51 -0.89 -0.31 -0.26 - - - - -0.43 0.35 -1.06 - - - -0.39 0.54 - 2.52 2.12 1.7 -0.14 -0.05 -2.1 -
- - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - -1.04 -0.65 0.62 - - - - -3.59 - 2.15 4.42 - 0.34 -1.8 -1.59 0.63
0.07 0.08 0.15 -0.04 0.04 -0.22 -0.46 -1.11 -0.72 -0.94 -0.72 -0.81 1.73 -0.9 -3.16 1.89 -0.69 -0.39 0.75 -4.84 -0.75 -1.33 -2.84 -0.99 -1.98 0.12 1.87 0.83 -0.63 -0.2 -0.45 -0.02
-0.74 -0.93 -0.29 0.1 0.77 1.24 -0.04 -0.34 -1.77 -1.27 -1.93 -1.53 1.45 0.23 -2.42 1.87 -3.53 -2.91 -0.38 -3.43 -1.66 -7.39 -3.63 -2.15 -0.92 1.15 2.4 1.61 -2.14 -1.81 -1.38 -1.21
- - - - - - - - - - - - - - - - - 2.37 1.68 - - - - - - - 2.97 3.98 - - - -
-0.64 -0.22 0.46 -1.86 -1.87 -1.2 -0.82 -1.78 -4.33 -3.01 -0.89 -1.07 - -2.73 -4.94 -0.57 0.56 1.31 2.0 - - - 1.23 -0.11 -2.19 0.0 1.32 0.99 2.06 0.82 0.95 -1.22
-0.51 -0.34 -0.53 -2.42 -0.16 -0.44 0.08 0.08 -1.57 0.29 0.24 -0.56 -3.28 -3.04 -2.23 -0.77 -0.47 -1.16 0.52 - - - -1.03 -1.44 - 2.05 2.84 1.73 0.34 0.02 -0.37 -1.74
1.29 - -2.74 0.01 - -1.4 -3.48 0.25 0.81 -2.15 0.03 -0.86 - - -3.64 - - -2.9 - - - - - - - 3.34 3.3 1.58 - - - -
-0.04 - -4.07 -1.32 - -2.73 -4.81 -1.08 -0.52 -3.48 -1.3 -2.19 -1.13 - -4.97 -0.25 -1.47 1.59 2.19 - - - -0.16 -0.48 - 2.01 1.97 0.25 1.73 0.7 1.06 0.55
-1.43 -0.62 -4.66 -4.24 -0.55 -2.26 - -3.35 - -2.71 -6.54 -2.18 -1.37 -4.19 -6.4 0.26 -2.45 -2.85 -0.37 - 1.16 - 0.1 2.16 1.33 1.11 2.92 -0.04 0.04 0.15 1.36 0.12
-1.5 1.52 0.91 -0.3 -0.77 -1.12 -0.47 -0.77 -0.86 -0.56 -0.55 -0.42 -0.39 -0.17 0.26 0.8 0.69 0.28 -0.37 - -3.59 - 0.75 -0.66 0.65 -0.16 2.19 -0.19 0.14 0.01 -1.51 -2.89
-2.45 - - -3.35 - - - -4.14 - -3.56 - -3.86 - - - - 0.2 1.69 2.12 - 1.14 - 2.27 0.59 -0.25 -1.3 2.73 -1.51 0.82 0.7 0.22 0.54
1.07 - 2.15 - - - - - - - - - -0.68 - 0.85 - - - 1.14 - - - - - - - 2.79 3.8 - - - -
-2.45 - - -3.35 - - - -4.14 - -3.56 - -3.86 - - - - 0.2 1.69 2.12 - 1.14 - 2.27 0.59 -0.25 -1.3 2.73 -1.51 0.82 0.7 0.22 0.54
-0.21 -0.31 -2.86 -2.79 -0.47 -1.88 -2.13 -1.06 -3.03 -2.36 -1.13 -0.32 - - -4.18 -5.6 -2.03 -2.13 -2.76 - 2.35 - -0.98 -2.27 2.91 1.95 2.42 0.13 -0.26 -0.62 -0.37 -2.53
-1.57 -1.81 - -2.19 -2.93 -2.63 -2.49 -1.25 - -0.99 -3.22 -1.84 -5.1 -2.55 - -3.47 -0.17 -0.81 -0.3 - 1.9 - 0.95 -0.88 3.07 0.44 2.25 -1.49 0.28 0.1 1.26 0.13
0.37 0.56 0.59 0.17 -0.39 0.02 0.06 0.25 0.29 0.38 0.31 0.34 -0.24 0.03 -0.27 -0.29 -0.33 -0.51 -0.56 -1.55 0.08 -1.95 -0.67 -0.6 -0.09 0.67 1.11 0.77 -0.64 -0.88 -0.69 -0.44
- - 4.05 - 2.55 - - - - - - - - - - - - 3.26 - - - - - - - - - - - - - -
-0.44 -1.43 -1.25 -2.08 -1.31 -2.3 -0.42 -0.95 -2.59 -0.98 -0.97 -0.82 -0.77 -0.16 0.45 0.12 0.18 -0.24 0.85 -2.64 -3.99 1.22 -0.23 -1.46 -2.27 1.05 2.33 1.15 0.36 0.44 0.21 0.87
- - - - - - - - - - - - - - 2.34 - 2.35 - - - - - - - - 3.34 3.55 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.