Heatmap: Cluster_52 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - 3.98 - - - - - - - - - 4.02 - - - - - - - - -
-0.69 -0.68 -0.77 -0.77 -1.13 -1.03 -0.42 -0.58 -1.2 -1.02 -0.71 -0.63 3.18 -0.53 -0.08 2.16 -0.96 -0.68 -0.17 -3.63 -1.89 -3.31 -0.78 -0.74 -0.11 -0.08 -0.06 -0.58 -1.01 -0.7 0.11 -0.92
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- -2.12 - - - -0.14 - 0.67 - - - - 4.29 -1.3 -1.83 2.17 -1.41 -1.01 -1.97 0.56 - - -4.13 -3.3 - - -0.22 - -0.89 -2.63 -2.65 -
-2.37 -2.32 -2.25 -2.22 -2.28 -2.03 -2.18 -2.15 -1.98 -0.93 -2.37 -4.26 4.4 -1.84 -2.29 -2.4 -1.88 -0.49 1.15 - - - -2.29 -3.02 -0.73 -0.29 -0.31 -0.08 -2.76 -2.74 -2.07 -2.52
-7.5 -8.81 - -9.07 -8.49 -6.14 - -8.18 - -6.18 - - 4.89 -7.28 - 0.96 - - -6.21 - -7.1 - -7.35 -4.94 -3.66 -4.88 -4.8 -6.36 -7.68 -4.94 - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
-3.43 - -3.14 - -4.36 - -5.49 -3.99 - - - -3.5 4.67 -3.0 -2.72 2.46 -5.16 - -4.29 - - - -5.15 -4.36 - - - - - -3.7 - -5.41
-3.43 -3.45 -2.79 -1.11 -0.68 -0.17 -0.87 -1.43 -2.11 -2.36 -3.04 -3.52 4.43 -0.83 -0.31 1.5 -5.12 -7.91 -4.1 -6.98 -6.67 -4.71 -4.65 -3.21 -0.77 -1.48 -1.65 -1.56 -3.86 -2.41 -5.18 -2.79
-7.86 -6.91 -9.34 4.37 -6.05 - -4.62 -7.73 -9.76 -6.02 -8.96 -5.39 - - -9.96 -6.62 - - 2.9 - - - 1.91 - - - - - - - - -
- - - - - - - - - - - - - - - -22.75 -1.59 - - - - - 4.98 - - - - - -23.95 - -17.28 -14.5
- - - - - - - - - - - - 4.46 - - - - - - - - - - - - 3.31 - - - - - -
-0.83 -3.13 -5.12 -3.65 -1.29 -2.43 -4.91 -3.81 -5.14 -3.42 -2.37 -2.58 3.72 0.94 0.3 1.53 -0.69 -2.06 1.22 -1.45 -0.44 - -0.5 -1.13 1.52 -1.3 - - -0.45 -0.57 -1.6 -1.52
- - - - - -0.65 - - - - - - 4.22 -0.93 -1.42 2.45 - 0.7 - - - - - - 1.35 - 0.71 - - -0.83 - -
- - - - - - - - - - - - 4.92 - - 0.57 - - -2.55 - - - - - - - - - - - - -
-1.15 -3.22 - -3.13 - -2.01 -2.21 -1.15 -0.83 -1.37 -1.4 -3.29 4.6 -1.26 - 1.51 - -3.1 -3.0 - - - - -1.92 - -2.06 - - -1.58 -3.01 -3.05 -3.11
-1.33 -1.64 -1.74 -1.0 -3.27 -1.51 -1.33 -1.64 -0.89 0.02 -1.13 -1.59 3.84 -0.1 -0.51 2.08 -0.06 -0.51 -1.03 -5.94 - -4.58 -1.14 -1.77 -2.63 0.25 -0.49 -0.59 -1.56 -2.08 -1.54 -2.27
- - - 2.08 - - - 1.84 - - 1.98 0.55 - - 0.45 1.21 - 2.41 - - - - - - - 1.34 2.36 - - 1.09 - -
-6.68 - - - - - -3.4 - - - -4.71 - 4.71 - - 2.45 - - -4.49 - - - -4.54 -4.4 - - - - - -4.49 - -
-1.48 -3.21 -1.5 -1.88 -2.36 -2.24 -1.15 -1.6 -0.93 -1.33 -1.05 -1.48 3.81 1.15 -2.73 2.6 -5.37 -0.15 -4.42 - - - -0.88 0.61 -0.03 -1.63 -1.84 -2.06 -2.6 -3.0 -2.73 -2.34
-3.27 - -2.18 - -2.28 - -2.52 - - - - - 4.87 - -1.33 - - - -2.28 - -1.0 - - - -0.28 - - - - -2.29 - -
- - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - -
- - - 3.15 - - - - - - - 1.16 - 0.97 - - - 1.96 - - - - 1.09 - - 2.37 2.54 - - 0.97 - -
-5.39 -4.0 -6.11 -6.94 - -3.91 -6.34 -5.34 -2.8 -7.27 -4.81 -5.84 4.76 0.65 -4.74 0.99 - -5.44 -3.65 - -4.51 -4.13 -5.35 -6.03 -1.3 -3.65 -2.81 - - -6.25 - -7.36
-1.04 -4.24 -2.47 -3.19 -1.15 -0.63 -0.47 0.04 -0.4 -0.28 -0.59 -1.09 3.91 -0.58 -0.05 1.87 -2.51 -1.28 -2.91 -2.88 -2.7 -3.77 -2.97 -2.63 -1.0 -1.88 0.18 0.14 -2.55 -1.69 -1.93 -2.57
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
-4.43 - - - - - - -2.21 -1.98 -1.71 - - 4.66 -0.35 -1.27 2.2 - - - - - - - -2.79 - - - - - - - -
- - - - 3.13 - - - - - - - - - - - - - - - - - 3.6 - - - - - - 3.47 - -
- - - 3.66 - - - - 2.63 - - - - - - - - - 3.72 - - - - - - - - - - - - -
-1.15 -3.76 - -0.45 -0.19 0.04 -2.73 -1.0 -1.36 -1.73 - -0.71 3.21 1.0 -0.51 2.06 -1.51 -1.11 -0.57 - - - -1.3 -0.56 -0.79 0.05 -0.81 -0.38 1.97 -1.98 -0.15 -2.68
1.38 - - 3.02 - - - - - - - - - - - - - - - - - - 4.41 - - - - - - - - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - -
-3.16 -2.38 -3.61 -3.14 -4.16 -4.15 -2.79 -3.03 -2.28 -3.03 - -3.31 4.66 - -3.93 -2.88 - -4.18 2.29 -3.32 - - - - - - -2.79 - - - - -
-1.29 - -2.32 -1.21 -0.89 -0.87 - -2.34 -2.33 0.07 - -0.13 3.82 0.61 - 2.83 -1.83 0.87 -1.97 - - - -0.91 - - 0.12 - - - -0.94 - -2.05
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
-1.2 -5.15 - - -1.53 -0.24 -1.49 -0.91 - -0.61 - -4.31 4.48 0.61 -3.31 -0.25 -2.62 -3.78 -2.85 - - - -1.81 -0.1 -0.35 -1.74 - -0.35 -2.68 -2.89 - -2.4
- - - - - - - - 2.79 - - - - - 2.48 - - - 3.22 - - - 3.35 - - - - - - - - -
-3.22 -6.3 -4.95 -2.44 -6.06 -3.84 -3.43 -3.1 -3.33 -2.22 - -3.95 4.31 -1.36 -0.05 1.21 -2.62 -2.68 -2.38 -1.13 0.23 -0.53 -3.21 -3.51 -0.61 -0.32 -0.21 0.25 -1.92 -1.51 -2.5 -2.88
- - - - - - - - - - - - 4.98 -1.51 -5.34 -4.37 - -6.41 - - - - - - - - - - -31.41 - - -
- - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.37 -1.18 -0.29 -0.52 - - 0.21 -1.42 -0.5 -1.5 -0.24 -1.07 3.41 1.03 -0.25 2.14 - -2.24 1.19 - - - -0.08 -0.49 - -0.74 0.7 - 0.1 - - -
-1.4 -2.3 -2.22 -1.72 -1.56 -1.76 -1.64 -1.08 -1.32 -0.83 -1.1 -1.13 3.67 -0.41 -1.96 2.63 -2.98 -3.55 -1.8 -0.51 -0.67 -0.5 -2.72 -1.96 -0.82 -0.07 -1.41 -1.3 -2.56 -2.2 0.77 -1.53
- - - - - -5.4 - - - - - - 4.99 -5.26 -2.41 - - -5.07 - - - - -7.36 - - - - - -7.0 - - -6.59
-8.81 - -5.77 - - - - - - -7.0 - - 5.0 - -7.83 - - - -6.25 - - - -7.88 -7.79 - -6.56 - - - -7.78 - -10.75
- - - - - -29.24 - -9.85 - - - - 5.0 - - -6.18 -9.51 - -6.47 - - - -24.43 -7.69 - - - - -26.61 - - -21.48
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - 1.52 - - -0.25 -0.04 1.34 - - 0.96 - 2.16 - - - 2.26 -0.24 - - - 3.06 0.85 0.84 - -0.25
- - - 1.91 - 1.91 - - - 0.23 1.11 1.52 - - 0.07 - 0.63 2.87 2.82 - - - - - - - - - 0.38 - - -
-0.87 - - - - 1.05 - - - -0.33 -0.09 1.51 4.37 - - - - - - - - - 0.14 1.0 - - - - - 0.03 - -
- - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-2.94 -1.76 -1.14 -2.22 0.15 -1.82 -4.13 -2.52 -1.14 -0.19 -3.2 -2.31 4.44 -0.15 -2.5 0.96 -2.58 - 0.54 - - - -3.38 -3.97 -0.34 -3.89 - - -3.97 -2.65 -5.01 -4.08
-3.05 -1.69 -0.23 -0.71 -1.02 -1.17 0.96 1.17 -0.13 0.47 -0.26 -0.84 3.92 -3.12 -5.03 -1.21 -2.59 -2.33 -0.35 - - - -1.87 0.34 -0.67 -0.51 -0.65 -1.7 - -4.26 -1.52 -2.77
-2.53 -0.02 0.2 -1.46 - 2.23 -1.44 -0.69 - - - -1.47 4.08 - 0.41 0.7 - -0.0 0.23 - - - - -0.27 - - - - - -1.34 - -
-2.24 -3.43 -4.66 -2.19 -3.23 -1.75 -1.61 -2.71 -0.8 - -1.43 -2.4 4.61 - - 0.64 - - - - - - -3.19 -4.15 - -0.18 -0.17 0.27 -3.38 -2.23 - -
- - -3.37 - - - - - - - - - 4.74 - - 2.08 -2.11 - - - - - - -2.12 - - - - -2.1 - - -2.15
-1.28 - - - - - 0.5 2.15 - - - - 3.5 -0.54 - 1.84 - - -0.37 1.57 - - - 0.64 1.74 - - - -0.44 - -0.33 -
- - - - - - - - - - - - 4.06 0.19 0.91 1.71 0.3 - - - - - 1.37 1.8 - - - - - -0.73 -0.73 -0.79
- -0.45 - 1.28 - - -0.38 - - - - - 1.27 - -0.94 1.3 -0.44 0.28 1.56 - - - 2.46 1.18 - 0.77 - - -0.43 0.61 2.2 0.53
-2.86 -4.72 -4.46 -3.63 -4.63 -3.27 -4.22 -3.96 -5.26 -4.46 -2.51 -3.65 4.42 -2.65 -6.57 2.85 -6.37 -4.33 -2.23 - - - -6.22 -4.68 -2.44 0.03 -1.64 -1.64 -4.09 -3.9 -4.84 -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
-1.6 -1.56 - -1.93 - -0.34 - - - - 0.77 -1.77 4.19 -0.35 -1.4 2.74 - - 0.53 - - - - - - -0.3 - - - - - -
- - - - - - - - - - - - - - - - - 3.98 - - - - 4.02 - - - - - - - - -
-0.78 0.47 0.16 0.69 -1.21 -0.55 0.2 -0.26 -1.21 -1.37 -2.17 -0.34 3.98 -6.49 -3.64 0.58 -2.8 0.3 -6.01 -4.81 -3.02 - -1.55 0.25 -1.88 -2.98 -5.05 -7.79 -0.5 -0.38 -5.6 -4.49
-1.86 - - -3.42 - - - -3.31 - - - -0.4 4.33 - - 3.15 -2.75 - -0.55 - - - -2.93 -2.94 - - - - - -0.55 - -
- - - - - 1.32 - - - - - - - - - 1.44 2.35 - 1.29 - - - 1.42 1.21 - - - - - 2.88 1.25 2.19
- - - - - - 0.65 - - - - - 4.56 - - 2.1 -0.98 - -0.99 - - - -1.04 0.01 - - - - - - - -
-0.11 - - 1.35 - - - - 0.33 - - - 2.1 - - 0.53 - 0.59 1.96 - - - 2.72 1.93 - - 1.64 - - 1.39 - -
-3.98 - - -1.21 - - - - - -2.71 - -2.57 4.55 - -1.44 2.31 - - -0.86 - - - -2.49 0.11 - - -1.04 - -2.42 - - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - 3.48 - - - - - - - 4.38 - - - - - - - - -
- 0.58 2.45 2.38 1.66 - - - 1.65 0.52 - 1.92 - 1.05 - - - - - - - - - - - - 2.64 - - - - -
-0.81 -2.64 -3.47 -0.27 0.0 -0.81 -2.56 0.14 -3.33 -4.12 -5.48 -0.85 3.77 -0.57 0.28 2.89 -2.5 -4.26 -0.47 - - - -0.97 -2.84 -3.43 - -1.8 -0.7 -1.63 -2.14 -1.44 -1.89
-3.36 - -21.48 -5.67 -3.33 -3.75 - -4.09 - -3.86 -1.16 -2.37 4.69 0.44 -3.54 1.83 - -4.56 -3.64 - - - - - - - -3.89 - - -19.66 - -19.76
-4.95 -2.07 -9.62 -7.38 -3.94 -4.47 -4.33 -3.71 -9.38 -4.34 -6.57 -4.86 4.64 0.47 -4.45 1.69 -6.06 -7.87 -6.12 -5.6 - - -7.54 -3.71 -1.12 -1.77 -0.79 -2.77 -7.01 -3.01 - -3.91
- - - - - - - - - - - - 4.19 - - - - - - - - - 3.77 - - - - - - - - -
-0.78 0.47 0.16 0.69 -1.21 -0.55 0.2 -0.26 -1.21 -1.37 -2.17 -0.34 3.98 -6.49 -3.64 0.58 -2.8 0.3 -6.01 -4.81 -3.02 - -1.55 0.25 -1.88 -2.98 -5.05 -7.79 -0.5 -0.38 -5.6 -4.49
-0.22 - - 2.75 - - 0.77 2.1 - - - - - - - - - 1.55 0.87 - - - 2.53 - 2.97 - - - - - - -
-0.78 0.47 0.16 0.69 -1.21 -0.55 0.2 -0.26 -1.21 -1.37 -2.17 -0.34 3.98 -6.49 -3.64 0.58 -2.8 0.3 -6.01 -4.81 -3.02 - -1.55 0.25 -1.88 -2.98 -5.05 -7.79 -0.5 -0.38 -5.6 -4.49
-0.78 0.47 0.16 0.69 -1.21 -0.55 0.2 -0.26 -1.21 -1.37 -2.17 -0.34 3.98 -6.49 -3.64 0.58 -2.8 0.3 -6.01 -4.81 -3.02 - -1.55 0.25 -1.88 -2.98 -5.05 -7.79 -0.5 -0.38 -5.6 -4.49
-1.22 -1.62 -1.86 -1.86 -1.28 -1.88 -1.4 -0.42 -0.51 -0.08 -0.29 -1.18 4.18 0.4 -5.12 1.14 -5.33 -4.65 -1.0 -4.35 -7.27 -10.48 -1.74 -0.88 -0.03 -0.11 -1.95 -1.83 -4.04 -2.82 -3.57 -3.46
-0.76 0.43 0.15 0.53 0.67 0.81 -0.47 0.04 0.11 0.44 -0.17 -0.21 -0.25 0.44 -0.22 0.79 0.65 0.77 -3.1 - - - 1.7 -0.14 -1.4 -1.5 -0.28 -0.07 -0.19 0.14 -0.48 -0.57
-1.82 -2.67 -3.3 -2.43 -1.38 -1.05 -0.53 -0.3 -0.77 -0.66 -0.87 -1.36 3.98 -1.99 -1.72 2.04 -2.24 -1.51 -2.11 -7.07 -2.61 -3.81 -2.42 -1.28 -2.29 -0.56 0.34 0.17 -1.81 -1.3 -1.68 -1.46
-1.46 -0.87 -2.16 -1.01 -1.32 -1.25 -0.75 -0.75 -0.68 -1.42 -0.58 -1.16 3.65 -0.92 -1.13 2.26 -0.37 -2.6 -0.38 -4.21 -5.97 - -0.12 -0.36 -1.51 -0.24 -0.87 -1.1 -0.96 -0.48 -0.88 -1.2
- - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - -
- - - - - - - - - - - - 4.44 - - 3.32 - -16.86 - - - - - -2.68 - - - - - - -2.5 -
- - - - - - - - - - - - - - - 0.57 0.42 - 0.41 - - - 2.9 1.93 - - - - 1.64 2.17 2.2 2.12
- - - - - - - - - - - - 3.8 - - - - - - - - - - 2.05 - - - - 2.24 2.2 2.21 -
-0.92 0.0 0.31 0.12 0.41 -0.21 -0.9 -1.3 -1.6 -1.28 -1.17 -1.7 3.47 0.64 0.26 1.89 -4.32 -3.36 -1.01 - - - -3.04 -1.63 0.92 0.31 -0.29 -0.72 -3.94 -2.18 -4.69 -4.11

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.