Heatmap: Cluster_61 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Ovary
Microspore
Generative cell
Pollen
Sperm cell
Pollen grain
Pollen tube
Pollen tube (1.5h)
Pollen tube (3h)
Pollen tube (9h)
Pistil
Style (before flowering)
Style (after flowering)
Style (pollinated, after flowering)
Flower (buds)
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Pericarp/Exocarp (4 DPA)
Pericarp
Pericarp (5 DPA)
Pericarp (7 DPA)
Pericarp (10 DPA)
Fruit (mature green)
Fruit (breaker stage)
Septum (7 DPA)
Septum (10 DPA)
Septum/Seed (4 DPA)
Seed (5 DPA)
Seed (7 DPA)
Seed (10 DPA)
Seeds (10 DPA)
Seeds (20 DPA)
Seeds (30 DPA)
Seeds (Pk-stem)
Seeds (Br-stem)
Seeds (Pk-equatorial)
Seeds (Pk-stylar)
Seeds (Br-stylar)
Seeds
Seeds (RR)
Seeds (LR)
Seeds (MG-equatorial)
Hypocotyl
Seedling (leaves)
Seedling (roots)
Callus
Meristem (vegetative)
Meristem
Apical meristem
Leaf
Root
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root hair cells
2.85 4.43 1.98 - - - - - - - - - - - - -3.23 - -2.95 1.63 4.41 - - - - - - - - - - - - - - - - - - - - - -4.54 - - - - -3.28 - -2.63 - - - -4.16 - - -1.66 - -
1.94 3.31 1.15 -2.85 3.94 - 0.85 -5.0 -4.0 - -5.86 -5.5 -1.6 -3.01 -3.57 -1.64 - -2.0 1.6 1.62 -4.09 0.05 -2.58 -2.67 -2.72 -1.46 -3.73 -2.08 -1.3 -3.2 -1.93 -3.14 -2.46 - 0.13 - -1.87 -1.31 - -1.34 - -2.17 -1.84 - - -0.83 -2.2 -0.47 -0.52 -0.02 0.06 0.44 -1.08 0.25 -0.14 -0.12 0.7 -0.53
4.08 4.61 1.53 - - - - - - - - - - - - - - -2.12 2.71 - - - - -0.88 - 2.18 0.22 - - - - - -1.87 - - - - - - - - - - - - - - - -1.21 - - - - - - - - -
2.68 3.24 2.57 -0.98 - - - -0.62 -0.13 1.84 1.82 1.56 -1.26 0.91 1.05 0.45 - -1.37 2.96 2.23 - - - - - - -3.43 - - - - - - - - - - - - - - - - - - 0.71 - - 0.07 - -0.88 0.18 -1.61 -0.38 - - - -
- 4.23 - 1.4 3.21 - - - - - - - 1.92 -1.8 -1.65 -1.55 - - - - - - - - - - - - - - - - - - 1.14 0.3 0.99 0.95 - 1.71 - -0.59 - 3.12 - - - - 1.39 - - - - - - - - -
1.81 3.6 0.58 0.87 0.57 - - -2.87 - - - - 0.37 - - -2.74 1.13 - 0.84 -1.63 0.56 - 0.89 0.68 -0.53 -1.86 - 0.97 0.98 0.18 0.07 0.39 -0.84 - - - - 0.07 2.06 -0.46 - -0.93 - - - -2.2 - -0.68 1.9 1.24 -2.09 - -1.62 -0.66 0.82 -0.35 -0.59 -
3.33 2.84 1.96 0.91 0.46 - -2.12 -5.91 -4.91 -8.19 -6.82 -6.68 0.5 -2.55 -2.24 -2.82 -0.11 0.12 2.12 1.5 -2.4 -1.22 -0.26 -0.92 -0.88 1.69 -0.42 -2.92 -2.16 -2.22 0.37 -0.35 -0.63 -4.15 -0.15 -1.31 0.13 -0.56 -0.49 -0.31 -1.63 -0.35 0.19 -1.59 -0.81 -0.41 -9.24 -0.81 -0.31 -4.91 -3.75 -4.14 0.18 -0.82 -3.56 -2.01 -1.88 -6.35
2.84 3.07 0.77 0.56 2.76 -1.45 -2.55 0.88 0.75 -0.69 -0.74 -0.83 -2.28 0.08 -0.26 0.37 - 0.2 0.72 -0.11 - 1.82 - - - - -2.97 - - - - - - -1.59 -0.97 -3.38 0.36 -1.44 -0.39 -0.38 -1.39 -0.14 -0.01 0.65 0.14 1.95 -3.04 -5.19 -1.04 - -0.69 -0.86 -0.57 -1.19 - - - -
3.86 4.75 1.28 - -1.27 - - - - - - - - - - - - -3.85 2.04 3.16 - - - - - - - - - - - - - - - - - -2.33 - - - - - - - - - -1.98 - - - - -4.44 - - - - -
1.16 2.88 -1.38 3.64 2.74 - 3.29 -2.21 -2.26 -2.92 -3.75 -3.14 0.18 -3.25 - -4.65 -3.11 -0.12 1.24 0.29 -0.65 -1.05 -1.0 -0.64 -0.72 - - -0.17 -1.07 0.1 -0.41 -0.83 -2.81 - 0.08 - - -2.46 - - - -2.34 -1.13 - - -0.98 - -2.26 0.54 - -0.46 - -1.1 -1.96 - - -2.74 -
0.24 3.72 0.76 - 1.58 - - -3.78 - - - - -0.59 - -1.86 -1.92 -0.18 -1.5 0.38 0.86 0.4 - 0.88 1.05 1.32 0.24 -2.3 1.25 0.79 -0.23 1.72 2.02 1.11 - 1.66 - - - - - - -1.72 - - 0.44 - - - 0.17 -0.38 0.78 - -0.06 -1.39 - - - -
3.07 3.21 2.21 2.2 - - -2.88 - -5.46 - - - 1.2 -2.47 -3.7 -1.2 - -0.38 2.35 1.64 -3.69 1.38 -2.21 -2.49 -3.43 - - -2.7 -0.35 -2.59 -3.97 -3.23 -3.64 - - -2.01 0.32 - -0.22 -0.73 - -2.41 - - -1.18 0.68 - 1.57 0.3 -0.74 -3.37 -0.98 -1.09 1.15 -1.42 - -0.29 -
2.42 3.24 1.42 2.76 1.48 -2.42 -2.59 -3.61 -0.69 -0.31 -0.24 -0.38 1.23 -0.71 -2.53 -1.52 - -0.79 1.06 1.22 - 1.35 - -3.62 -4.36 - -3.83 -2.66 -1.34 - - -3.09 -4.34 - - - - -1.91 - - 0.07 -2.93 - 1.11 - 1.09 -3.08 -1.7 1.91 -1.97 -2.52 1.16 -0.26 -1.92 0.25 -1.51 -1.72 -
3.76 4.25 1.53 -2.37 - - - - -4.89 -6.06 - -5.15 -3.28 0.68 0.71 0.58 - -3.04 2.95 2.84 - 0.34 - - - - - - - - - - - - - - - - - - - -3.03 - - - - - - - - - - -3.07 -2.37 -0.62 - - -
2.78 4.39 2.75 1.27 -0.14 - - - - -4.97 - - 0.91 -0.24 -0.12 0.19 - -0.23 1.58 0.18 - - - - - - - - - - - - - - - - - -0.4 - - - -3.65 - - - -0.07 - - 0.25 - - - -0.9 0.95 - - - 2.29
- 4.12 1.41 0.41 1.85 - - - - - - - - -3.02 - -0.83 - -2.44 2.92 0.26 -0.42 2.14 1.47 -0.25 -1.71 -1.41 -17.95 -0.88 - - -1.44 -2.78 -0.93 2.99 0.22 - - - - - - -2.83 - - - - - - 0.12 - 0.44 - -2.37 -1.38 - - - -
-1.03 2.73 -0.72 2.93 - - - - - - - - 0.68 2.74 1.51 1.66 0.87 -4.09 -0.94 -1.25 0.07 - -1.12 -0.33 0.87 -1.68 -2.32 0.32 -0.09 -0.34 0.42 0.44 0.62 0.38 -0.23 0.8 - -0.37 - -0.94 - -1.83 - - -0.58 1.05 - - 0.97 -0.02 -0.59 -2.34 -2.5 -1.2 - -0.68 -1.1 -
3.91 5.2 1.71 -1.48 - - - - - - - - -1.05 - - - - - 0.29 -0.26 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.29 - - - - -
3.26 3.91 2.81 - - - - -3.49 - - - - - - - -2.93 - 0.16 2.84 2.01 - - 1.44 0.48 0.12 -1.78 -1.05 - - - 0.97 0.17 -0.2 - - - - - - - - -4.98 - - - - - -0.9 - - - 1.54 -1.12 - - - - -
3.7 3.36 2.79 - - - - - - -3.49 -5.47 -5.69 - - - - - - 4.05 3.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -2.55 - - - - 1.28
3.38 3.55 2.61 -4.59 - - - - -8.44 - - - -1.89 -0.47 0.73 0.67 - -0.19 3.5 3.02 - -4.07 - - - - - - - - - - - 0.47 -2.78 -3.89 -4.24 -3.57 - -4.79 - -3.76 -4.15 - - -2.55 - -0.53 -2.51 - -3.72 -2.52 -2.13 -1.46 - - - 0.5
- 4.31 - -0.19 - - - - - - - - -0.87 - - - 3.6 - - - 1.33 - - -0.19 -0.73 - - 0.94 1.39 0.29 1.09 -0.97 0.22 1.66 2.82 - - - - - - - - - - - - - -0.9 -1.63 - - - - - - - -
0.08 5.15 -1.24 3.62 2.22 - 0.06 - - -4.34 - - 1.28 - - - - -1.94 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.83 - - - - -
2.93 4.32 - - 1.43 - - - - -4.44 - - 0.94 2.48 2.17 2.02 - - 2.68 1.41 - - - - - - - - - - - - - - - - - - - - - - - - - -0.35 - - -0.14 - - - -3.17 -0.48 - - - -
2.2 3.01 1.37 0.32 -2.32 -2.87 - -3.57 -1.28 -0.66 -0.53 -1.45 0.57 1.34 0.03 -0.32 -0.4 0.19 1.31 1.7 0.14 - 0.09 -1.22 -0.59 -3.17 -4.15 0.15 -0.54 -0.6 -1.84 -0.3 -0.86 - 0.64 - - - - - - -3.01 -1.26 - - 0.76 - -0.44 0.77 1.28 1.7 0.02 -0.34 0.04 -1.74 0.26 -0.35 -0.06
- 3.68 - -0.04 0.5 - - -3.69 - - - - 0.03 - - - - -1.54 1.03 -0.46 1.25 - - -2.09 -1.59 -0.62 -0.86 0.19 -1.38 1.44 1.59 1.49 1.28 - 0.92 - - 0.36 3.31 - - -0.17 1.3 - - - - - 2.18 - - - -2.2 -0.49 - - - -
2.97 3.69 2.48 - - - - - - - - - -1.15 -0.05 -0.18 -0.37 - -1.07 3.26 3.01 - 0.58 - - - - - - - - - - - - - - - -0.54 - -1.15 0.49 -0.07 - 0.53 - -1.37 - -3.31 -1.59 - - - -1.38 0.41 - - - 0.58
2.32 4.56 1.64 0.43 - - - - - - - - 0.05 - - -3.03 - - -0.1 0.66 - 1.65 - - - - -1.48 - - - - - - - 0.47 - - 0.47 - -0.1 - -1.05 1.41 - 0.46 2.79 - -0.06 -2.13 - - -1.5 -1.21 -0.57 - - - -
- 4.56 - - - - - -2.17 - - - - - - - - - - 4.09 - - - - - - 2.94 - 0.75 - - - 0.04 -0.54 - - - - - - - - - - - - - - 1.64 1.4 - - - -2.09 - - - - -
- 5.38 0.58 - - - - - - - - - 0.38 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.2 - 0.94 1.65 - - - -1.48 0.8 - - 2.08 -
2.3 3.2 0.41 3.45 - -2.41 -1.43 -1.96 -5.03 -3.36 -2.99 -4.67 2.17 -2.58 -1.16 -0.98 -1.3 -1.65 1.54 2.32 -2.91 -2.4 -1.23 -0.99 -4.23 -1.82 - -3.39 -3.49 - -0.94 -1.16 -1.78 - -0.74 - - - 0.21 - - -3.11 - - - -1.01 -0.97 0.46 -0.01 -2.34 0.21 0.52 -0.46 -1.68 0.58 -0.28 0.5 -1.19
3.66 3.76 3.23 -0.66 - - - -5.63 0.58 -0.58 -0.48 -0.67 -3.81 - -3.99 - - -1.2 2.33 2.8 - - - - - - - - - - - - - -0.45 - - - - - - - - - - - -2.5 - -3.05 -4.0 - - -1.5 -0.37 -1.4 - - - 1.65
3.85 3.96 2.04 - - - - - - -6.01 - -5.11 - - - - - - 3.68 3.16 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.1
1.25 2.96 -0.39 2.32 0.67 - -1.89 - -5.33 - - - 1.75 1.24 -1.52 -1.29 -0.33 -2.42 1.12 1.63 -1.87 - -0.13 -0.55 -0.84 -2.35 - 0.02 -3.79 - -2.06 -2.46 -2.09 -0.3 - - -1.14 -0.32 - - - -2.6 -1.11 - - 0.17 -2.34 0.74 0.44 -2.8 2.13 0.28 -0.24 -1.09 0.09 1.75 1.71 0.39
2.5 2.92 1.02 2.64 0.27 - 0.44 - - - - - 1.89 -2.02 -2.05 -3.08 -1.12 -2.65 1.04 1.49 -0.86 -1.02 -2.02 -1.89 -2.51 0.47 -1.75 -0.12 -0.96 -1.27 -3.42 -1.33 -1.02 1.13 -0.05 - - - - -1.32 - -2.08 - - 0.37 -1.32 -2.76 0.39 0.77 -1.37 1.07 -0.89 -1.49 -0.62 0.88 -0.16 0.46 0.16
2.38 4.27 3.13 - - - - - -2.46 - - - - - - - - - 0.36 1.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.3
4.43 3.85 0.77 - - - - - - - -4.13 -4.04 -1.73 - - - - -0.25 2.47 1.07 - 0.9 - - - - - - - - - - - - - - - - - - - - - - - 2.8 - -1.97 -0.34 - - -0.11 -0.77 - - - - -
0.81 2.76 0.46 1.64 3.13 -1.62 1.23 -1.56 -1.01 -0.84 -1.29 -1.43 2.77 0.62 -0.86 0.15 2.04 -0.7 - - - - - -1.94 - - -1.25 - - - -1.4 -2.69 -1.5 - - - - -1.78 1.56 - 0.56 -0.84 1.36 - - - - 1.47 -0.08 1.14 - -2.03 -2.93 -2.27 -0.53 - - -
1.19 3.26 1.35 0.7 - - - - - - - - 0.6 -1.26 - - - -0.8 3.67 0.92 - - - - - - - - - - - - - - - - 3.23 0.73 - - - -1.63 - - - - - -1.11 2.04 - 2.92 - -0.96 -0.3 - - - -
2.75 4.68 2.43 - - - - 0.54 -0.04 - -2.71 - 0.49 -0.26 - -0.28 - 0.56 1.69 2.49 - - - - - - 1.17 - - - - - - - - - - - - - - -1.97 - - - - - - 0.45 - - - -1.06 - - - - -
1.87 4.55 2.86 - - - - - - -2.38 - -3.45 - - - - - - 2.71 2.63 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.06 - - - - 3.39
3.18 3.02 2.29 - - - - - 0.17 1.07 1.0 1.28 - - - - - - 3.27 2.94 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.55 - - - - 3.41
- 5.38 0.04 - - - - - - - - - -1.63 - - -1.67 3.42 - - - - - - -1.1 - - - - - - - -0.7 -0.46 - - - - - - 0.5 - - - - - - - - -1.38 - - - -1.44 - - - - -
- 4.28 0.29 -0.08 - -0.02 - - - -1.72 -1.66 - - -1.86 -1.0 - -0.6 - - - - - - - -1.97 - 0.77 - - - - -1.37 -2.11 - - - - 0.51 - - 3.46 -3.05 - 3.5 - - - - 1.85 - - - -1.47 -0.25 -0.03 0.21 - -
-1.22 2.46 -1.14 2.68 - - - - - - - - 1.27 -2.11 -2.83 -2.63 -0.25 -1.95 0.43 - -1.46 -0.15 0.19 -0.28 -0.82 - -3.65 0.65 0.01 -2.01 -1.08 -1.32 -1.76 - -0.55 -0.62 - 0.57 0.25 - 2.25 -0.03 0.39 - -0.7 - - -0.49 2.14 0.57 2.27 1.48 -0.8 0.18 -2.23 -0.52 0.35 1.15
1.64 4.61 0.97 0.9 0.31 - 0.6 -4.68 - - - - 1.2 - - - - - 1.95 3.76 -2.15 - -2.15 -3.59 - - - - - - -1.11 -1.49 - - - - - - - - - -3.79 - - - - - -0.82 0.22 -0.77 - - -4.98 - - -1.26 - -
2.34 2.6 0.95 0.22 -5.84 -2.33 -3.71 -2.45 -2.51 -2.91 -3.05 -2.88 0.19 -1.16 -0.73 -0.68 -0.98 -0.53 0.93 1.02 0.55 0.29 0.26 0.35 0.43 -1.06 -1.25 0.42 0.63 0.35 0.22 0.17 0.2 0.86 0.58 -0.18 -1.36 -1.34 -1.82 -0.71 -1.78 -1.07 -0.62 -0.33 -0.63 0.0 -1.4 -0.28 0.66 0.35 0.7 -0.64 0.04 -1.15 -0.9 -0.81 -0.6 -1.02
1.72 4.37 0.16 2.86 3.49 - 0.2 - -3.51 - - - 1.09 - -1.61 - - -2.02 0.64 0.06 - - - - - - -1.68 - - - - - - - 0.48 - - - - - - -2.22 - - - -1.39 - -0.32 0.27 0.69 - - -1.51 0.02 - - -0.76 -
3.44 2.7 2.03 1.08 -0.31 - - - -3.78 -4.88 -4.29 -4.55 0.23 -0.5 -1.03 -2.74 - -3.05 3.35 3.45 - 1.36 - - - - - - - - - -4.0 -3.12 - 0.39 - - - - - - -2.28 - - -0.39 -2.82 - -3.03 1.23 -1.93 - -2.15 -1.16 -1.0 - -0.64 - -
3.21 3.45 1.92 -1.47 - - - -4.98 -0.91 0.28 0.35 0.35 -3.48 - - -5.87 - - 3.23 2.63 - -3.21 - - - - -4.18 - - - - - - -1.48 - - - -3.39 - - - -6.57 - - - 2.71 - -5.08 -2.61 - - -4.2 -4.11 -3.05 - - - 2.6
2.34 4.1 -1.89 2.19 - - - - - - - - -2.29 1.26 1.26 -0.69 - -3.39 - - -2.31 - - -2.95 - -1.64 -1.44 - - - - -2.33 -0.39 - - - - 0.74 1.28 -0.24 2.86 1.07 1.95 - - 1.3 - - -0.9 - - -1.65 0.45 -1.45 - - - -
2.26 3.76 1.27 - - - - -4.97 - - - - 0.34 1.25 -0.22 0.04 0.66 0.15 0.39 0.07 -0.84 -1.32 -3.53 -0.96 -0.34 0.71 -1.38 -0.14 -0.6 0.11 -0.42 -0.2 -0.57 1.42 0.54 -0.12 - -2.31 - - 0.03 -1.8 -0.83 - -0.93 -0.07 -1.36 0.76 -1.36 -0.8 1.29 -0.53 -0.69 -0.47 - -1.38 -0.34 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.