Heatmap: Cluster_234 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Ovary
Microspore
Generative cell
Pollen
Sperm cell
Pollen grain
Pollen tube
Pollen tube (1.5h)
Pollen tube (3h)
Pollen tube (9h)
Pistil
Style (before flowering)
Style (after flowering)
Style (pollinated, after flowering)
Flower (buds)
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Pericarp/Exocarp (4 DPA)
Pericarp
Pericarp (5 DPA)
Pericarp (7 DPA)
Pericarp (10 DPA)
Fruit (mature green)
Fruit (breaker stage)
Septum (7 DPA)
Septum (10 DPA)
Septum/Seed (4 DPA)
Seed (5 DPA)
Seed (7 DPA)
Seed (10 DPA)
Seeds (10 DPA)
Seeds (20 DPA)
Seeds (30 DPA)
Seeds (Pk-stem)
Seeds (Br-stem)
Seeds (Pk-equatorial)
Seeds (Pk-stylar)
Seeds (Br-stylar)
Seeds
Seeds (RR)
Seeds (LR)
Seeds (MG-equatorial)
Hypocotyl
Seedling (leaves)
Seedling (roots)
Callus
Meristem (vegetative)
Meristem
Apical meristem
Leaf
Root
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root hair cells
- - - - - - - 1.74 - - - - 3.17 - - - - - - - - - 4.57 1.98 - - - - - - - 4.17 - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 2.57 3.61 2.08 - - - - - - - - - - - - - - - - 1.65 - - - 5.02 - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 4.26 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.07 - - - 2.42 - - - - -
- - - - - - - 3.57 2.95 - - 2.44 - - - 2.32 - 3.79 - - - - - - - - - - - - - - - - - - - - - - - 0.18 - - - - - - 3.48 - - - 0.95 - - - - -
- 0.23 -0.18 0.21 -0.42 0.17 - 1.09 2.29 0.88 0.93 1.41 0.94 -2.23 -1.82 -2.87 - -1.48 0.14 -0.1 - 3.79 - - - - -1.24 - - - - - - 1.46 0.86 0.94 - - - 1.78 - 0.8 0.66 - 0.7 - - - 1.89 - - - -1.24 0.44 - - - -
1.23 0.16 0.66 -0.2 -4.06 - 1.77 -13.13 -8.36 - - - 1.34 0.22 0.63 -0.28 2.28 2.25 -3.66 -5.52 -2.51 3.83 -4.63 -3.13 -3.83 -1.5 1.08 -1.66 -1.58 -1.84 -0.89 -1.18 -0.81 0.14 -0.39 -1.0 -0.9 -2.45 -0.08 0.0 -1.06 -0.45 0.15 -0.03 -0.08 -4.87 -2.88 -6.72 -0.13 -3.89 -3.64 -0.75 1.08 -5.49 -5.95 - -5.75 -
1.5 0.03 -0.29 0.94 -4.89 -4.01 - -5.89 -5.88 - - - 0.71 -1.19 -1.41 -1.26 1.24 -0.3 1.42 0.39 -0.31 0.43 - -1.63 -2.14 0.28 -1.26 0.04 -1.13 0.09 -5.22 -1.39 -1.46 -1.43 1.02 -1.07 0.97 0.57 0.5 0.25 -0.5 0.31 1.58 1.22 -1.02 -0.42 -3.03 2.14 -0.57 1.0 0.56 1.61 1.81 -1.08 -2.62 -2.75 -2.34 -
-2.97 -3.19 -2.98 -0.92 1.94 -5.15 -3.31 -5.28 -5.51 -6.48 -6.05 -5.21 -3.34 -3.04 -4.13 -1.7 -1.82 -1.29 -4.19 -3.15 -3.8 4.43 -4.73 -4.15 -3.22 -0.57 2.34 -2.43 -1.9 -2.4 -3.08 -3.84 -4.57 -3.17 -1.8 -3.11 0.53 0.61 1.79 1.39 0.84 0.64 1.17 0.66 -2.41 -3.37 -7.32 -1.3 -3.22 -2.95 -5.11 -3.52 1.7 -3.78 0.67 -1.99 - -2.28
- - - 3.81 - - - 2.99 - 0.07 - - - 2.91 - 3.85 - 2.93 - - - - - - - - - - - - - - - - - - - - - - - 1.38 - - - - - - - - - - 1.54 - - - - -
- - - - - - - - - - - - 2.43 - - - - - - - - 5.5 - - - - - - - - - - - - - - - - - - - - - - - - - - 2.24 - - - 1.37 - - - - -
-0.59 -2.21 -2.47 -0.93 -3.04 - -6.73 - - - - -10.01 -3.09 -3.53 -3.51 -4.44 1.68 0.75 -1.34 -1.35 -2.65 3.78 -3.18 -2.41 -1.77 -1.35 1.69 -2.63 -3.34 -2.64 -3.41 -1.98 -2.62 -5.14 -1.37 -0.71 1.0 1.19 1.25 1.48 1.32 1.97 0.82 0.88 2.4 -0.85 0.8 -4.32 -4.33 -1.61 -2.86 0.02 0.57 -5.35 -4.15 -6.43 -6.33 -
- - - - - - - - - - - - - - 5.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 0.82 - - - - - - - - -5.7 -4.07 1.15 0.37 -2.76 -1.31 - - -3.86 5.39 - -4.02 -2.43 -4.71 -1.55 -3.17 -0.34 -4.58 - - -5.46 -1.99 -1.86 -2.68 - -2.76 - -2.17 - -4.43 - - - - -3.31 -3.93 -5.55 1.38 2.04 -2.65 -2.69 -2.36 -4.04 - - -
- -0.24 - - - 0.22 - 0.17 0.49 -0.36 0.32 -0.6 -2.7 - - - - 2.63 - - - - - - -1.52 0.1 - 0.29 -0.9 -1.55 - -0.41 0.78 2.0 2.76 0.46 1.73 2.19 1.2 1.62 1.2 2.25 1.34 - 0.24 - - - 1.16 - - - - - - - - -
-3.47 - - -3.85 - -0.77 - -0.88 0.96 0.24 0.45 -0.31 -2.84 -4.75 - -5.31 -1.9 2.06 - -3.63 -4.45 - - -4.16 -1.79 -1.35 - -4.24 -1.17 -1.42 - -1.1 0.44 -0.06 1.67 -0.07 2.31 2.3 1.46 2.13 1.46 1.95 2.43 2.64 1.06 - -5.06 - -0.37 - - - - - - - - -
- - - 1.64 - 2.12 - 0.85 -0.2 - -0.9 -2.74 0.42 - - - - -0.48 - - -0.98 - - - - - -1.2 - - - - - - - - - - 4.01 - 0.42 3.65 2.7 - - 2.96 - - - - - - - - - - - - -
-5.88 -8.17 -2.73 -1.92 -3.45 -1.7 -2.89 -0.77 -1.37 -1.63 -1.86 -1.83 -1.05 1.15 2.27 2.29 0.18 2.4 -1.83 -2.31 -1.78 4.67 -0.8 -1.06 -1.68 -2.98 1.19 -2.23 -3.78 -2.96 -2.91 -2.31 -1.89 -4.38 -4.83 -4.9 -4.51 -4.88 -5.51 -3.96 - -5.63 -6.51 -5.47 -6.57 -0.94 0.82 -0.9 -3.64 -2.2 -3.56 -1.56 -0.9 -2.52 -2.35 -4.57 -3.97 -1.06
- - - -1.07 - - - - -3.4 - - - -0.82 - - - 3.96 - 0.39 - - 4.48 - - - - - - - - - -3.19 - - - - 0.87 0.96 - 0.53 - -0.4 - - - - - - -1.85 - - - 3.49 - - - - -
- - - - 1.97 - - - -0.29 3.27 2.32 0.8 - - - - - 2.19 - - - - - - - - - - - - - - - - 2.67 - - - - 2.68 - 1.76 - - - 3.47 - - 2.3 - - - -2.74 - - - - -
- - - 2.64 3.54 - - - - - - - 3.06 - - - - - - - - - - - - - - - - - - 0.86 - - - - - - - - - 0.13 - - - - - - 3.46 - - 3.71 2.26 - - - - -
- - - - -1.24 - - - - - - - - - - - 1.39 -0.2 - -1.92 - 3.95 - -1.49 - - - - - - - -1.29 -1.58 - -0.09 - 2.1 2.35 2.85 2.77 1.85 1.81 0.92 - -0.11 -0.65 - -2.95 -0.09 - - - -0.7 -0.55 - - - -
- - - -1.97 - - - - - - - - 1.47 - -0.97 -1.67 - 3.68 - - -2.12 4.85 - - -2.98 - -2.82 - - - - -2.01 - 1.89 - - 0.04 - - -0.43 - -3.22 - - - - - - - - -1.51 -1.89 2.48 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.74 - - - - - - - - - - 5.33 4.13 - - - -
- - - 1.48 4.87 - 3.74 -3.07 - -3.24 - -2.2 -2.76 - - -2.85 -1.85 -2.1 - - - - -1.77 - - - - - - - -0.77 -2.3 -3.01 - - - - - - - - - - - - -0.63 - - -1.03 0.62 -0.21 - 2.66 - -1.35 - - -
-4.82 -4.77 - - - - - -8.17 -7.72 - - - - - - - - -5.58 - - - -0.98 - - - -5.2 - -4.12 -3.99 -5.01 - -3.93 -2.9 0.79 0.84 -0.79 1.4 0.86 0.63 1.01 1.14 0.52 -0.57 -1.14 -0.62 4.83 - - - - - - 3.46 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.86 - - - - -
- - - -2.9 - 1.31 - -2.68 -1.93 -3.51 -4.9 -5.2 - - - - 2.28 -0.44 - - - 4.19 -2.98 - - 0.07 -1.26 - - - - - -4.2 - - 0.35 2.36 0.92 1.68 0.88 0.09 1.95 0.72 1.72 1.83 -0.58 - -0.04 -3.66 - - - -0.29 - - - - -
-0.72 -1.38 -2.19 -4.0 -3.36 -9.35 -3.35 -8.58 -9.96 -11.23 -10.24 -12.42 -1.03 -2.1 -0.66 -1.27 -0.7 -0.04 -2.82 -2.05 0.32 2.3 -1.32 -0.22 0.55 0.03 -0.09 -0.15 1.23 0.5 -1.19 -0.18 0.25 -1.26 0.18 0.7 1.06 1.16 1.2 1.8 1.07 1.12 1.8 1.81 1.2 0.49 -2.8 0.97 -0.35 -3.38 -3.71 -5.01 -1.58 0.94 -1.72 -4.44 -6.84 -0.34
- - - - - - - - - - - - - 3.51 4.14 2.98 - - - - - - - - - - - - - - - - - - - - - 3.26 - - - - - - - 2.44 - - 2.61 - - - - - - - - -
- - - - - - - - - - - - - - - - - 5.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.86 - - - - - - - - - - 2.42 - - - 3.22 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.84 - - - - -
0.48 - - - 1.08 0.61 - 1.71 -0.24 -1.25 -1.3 -1.11 - 0.52 2.29 1.58 2.8 3.87 - - - 1.76 - - - - - - 0.53 - - - - - - - - - - - - - - - - 0.3 - 1.8 1.29 - - - 1.44 - 1.02 - - -
- - - 0.89 - - - - - - - - - -0.75 -0.21 - - 2.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.1 - 0.15 - 2.03 - 4.84 - - - - 3.64
- - - - - - - - - - - - -0.61 2.05 1.33 -1.37 - 1.91 - - 1.86 - - -1.95 - - - - - - - -0.77 -1.34 - - - - 0.97 - 2.38 2.95 1.96 3.09 - 1.8 2.76 - - 0.78 - - - 1.23 - - - - -
-10.29 -8.87 -2.41 -8.15 - - - -13.19 -14.75 - - - -2.55 -3.0 -2.98 -3.05 -3.76 -4.43 -6.05 -6.5 -0.11 2.89 -4.39 -0.72 0.71 -1.48 0.57 -0.65 1.44 -0.33 -4.13 -0.34 1.01 -2.53 1.86 2.06 0.4 2.21 0.77 1.77 2.81 1.66 0.57 0.79 2.34 -3.62 -7.07 -6.8 -11.88 - - -6.36 -4.87 -7.47 - - - -6.45
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.86 - - - - -
-0.05 -0.22 - 2.97 4.49 - -1.21 -3.55 -4.1 - - - 0.08 - - - -1.49 -3.22 - - - - -1.72 -2.77 -2.76 -0.57 - -1.94 -1.28 -0.82 -0.33 -3.33 -2.87 - - - 0.35 - - - - -2.1 - - - 0.92 -2.91 - 1.69 - -1.7 - 2.99 1.65 - - -0.34 0.47
- - - - - - - -2.47 -0.26 - - - - - - - - 5.02 - - - - - - - - - - - - - - 0.2 3.33 - - - - - - - 0.06 - - - - - - 0.77 - - - 3.4 - - - - -
-3.62 - - -2.34 - -1.21 - -7.01 -4.12 - - - - -2.7 -0.36 -1.0 2.17 3.91 - - - -3.94 0.97 1.17 1.38 -2.88 -12.61 - - -10.52 2.91 3.01 3.39 - - - - - - - - -6.35 - - -2.17 - - - -1.74 - - - 1.43 - - - - -
- - 0.07 -0.91 - - - - - - - - 0.15 -2.18 -4.32 -2.94 1.94 0.27 -0.6 - 1.18 - -1.47 0.54 0.96 -0.98 -0.57 0.67 3.05 1.82 -1.62 -0.85 0.17 -0.44 0.85 - - - -0.24 - - -3.06 -1.1 - -1.4 -3.49 1.13 2.44 -2.41 0.2 -0.14 1.71 2.31 -2.23 1.13 -2.5 - 0.59
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - -1.42 - - - - - - - - 1.95 - - - - - - - - - - - - - - - 3.61 - - - 3.31 - - - 2.09 - - 4.31 - - - 0.05 - - - 1.56 1.82 - - - -
- - - - - - - - - - - - - - - - - 4.53 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.21 - - - - 4.92 - - - - -
- - - 5.06 - - - - - - - - 3.48 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.29 - - - 1.86 - - - - -
- - - 4.08 - - 0.26 - - - - - -0.99 - - -1.61 - - - - - - - -1.62 -0.94 - 1.02 - - - 1.74 2.52 0.78 - 2.77 - - - 2.92 - - -0.3 - - - - - -0.88 3.19 - - - -1.14 - - - - -
-0.04 - 0.33 1.65 1.66 0.61 0.85 0.71 -0.37 -2.71 -0.09 -0.72 1.42 - -2.73 - 2.09 -1.41 - - - 2.63 -2.54 - - - -3.18 - -2.96 - - -2.53 -1.69 - - -1.04 -0.36 -1.25 0.73 1.12 0.73 -0.03 - 0.77 -0.43 - - 1.22 -0.22 - - - 2.22 2.35 -1.51 - - 1.84
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.48 - - - - - - - - - - - - - - - - - - - - 3.75 - - - - -
- - - - - - - - -0.54 - - - - -21.06 4.36 - - - - - 1.44 - - - - - - - - - - - - 4.5 - - - - - - - - - - - - - - 3.51 - - - -3.1 - - - - -
- - -0.13 1.14 - - -4.36 - - - - -6.0 -1.13 -3.61 1.18 1.42 2.68 1.7 -3.22 0.87 -1.52 - 0.76 -1.66 -2.98 - 0.39 -2.23 - -2.5 - -4.12 -2.93 - - - - - -1.7 - - -7.16 - -1.66 - 3.65 -2.58 1.61 0.73 0.35 0.33 -3.45 2.91 0.98 1.48 -3.28 - -1.93
-3.54 -3.5 -1.0 3.4 - - - -4.79 - - - - -1.93 -3.52 1.74 2.33 -0.88 3.2 - - - - - -5.41 - - -3.09 -4.49 - - - -4.7 - - - - - - - - - -5.22 - - - 4.39 -5.16 0.16 -2.66 - - -3.87 2.17 - -0.07 - -2.69 -
- - - 2.06 3.91 - - -2.38 - - - - -1.67 -1.14 -0.11 1.34 - -0.36 - - 0.64 3.79 - - -2.32 - - -0.84 - - 0.46 0.13 -1.4 - - - 0.79 1.34 - - - 0.56 - - 2.45 - - -1.91 -0.27 -1.6 -1.26 - -0.48 - -0.3 - - -
- - 2.67 2.11 - - -0.1 - - - - - - - -0.9 - 1.38 -0.48 - - - 3.39 - -0.86 0.76 - - - - - 0.7 0.7 -0.81 - - - - - - - - -1.3 - - - -0.69 -1.7 0.38 0.42 0.95 - -0.03 0.28 - 2.29 -0.02 3.59 -
-0.4 -2.96 1.62 - 1.7 - 0.11 -8.17 - - - - -4.46 1.07 1.63 1.47 - -0.71 1.08 1.15 -0.08 3.93 -2.44 -1.66 -0.54 0.3 -1.83 -0.87 1.04 -0.3 -2.79 -1.77 -1.48 - -2.25 -0.25 -1.44 -2.36 -1.37 -1.88 -2.38 -1.24 -0.34 -0.34 -0.45 - 0.22 1.43 -4.46 -2.59 -1.25 - -1.31 1.84 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.86 - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 2.32 0.63 - - - - - - - -1.09 - - - 1.03 - - - - - 2.15 -4.91 - - - -2.86 - - 1.01 1.06 -0.72 - - - - 1.87 3.91 2.0 - 0.78 2.61 - - - - 2.16 1.68 - 0.11 - -1.28 - - - - -
- - - 1.63 2.27 -4.3 0.86 2.67 1.35 - - -0.81 - - - -1.39 - 3.25 - - -2.29 - - - -1.33 -1.07 - -1.48 -2.52 -2.27 -2.52 -0.77 -0.48 2.56 0.02 - 1.5 0.67 1.83 0.09 -0.17 0.29 0.56 1.59 1.59 - - - - - - - - - - - - -
- -1.66 - 1.96 1.85 3.65 -5.94 1.82 -0.0 - -20.57 - -1.52 - - -2.08 -1.01 3.08 - - -1.42 -0.68 - -1.95 -1.38 -2.09 - -1.01 -0.26 -1.82 -1.15 0.17 0.01 - 1.79 -1.65 - -0.42 - - 2.07 0.74 - 2.33 -0.02 -2.84 -4.01 -3.45 -0.39 - - - -4.74 - - - - -
-4.16 -4.8 -1.44 -1.27 - - - -4.91 -4.43 -6.43 -7.34 -5.83 0.63 -3.82 -3.31 -4.55 0.25 0.13 - - 1.06 2.32 -0.14 0.77 1.28 -1.14 -0.38 1.57 1.9 1.31 0.81 0.84 1.16 - -0.74 -1.29 0.85 1.21 -0.08 0.98 1.07 0.42 -0.36 -0.63 0.69 -5.14 -3.09 -0.06 1.73 -1.95 1.39 -1.17 -0.68 -0.56 -2.56 -2.78 -2.23 -0.82
-2.0 -1.33 -1.3 1.21 - - -1.96 -1.6 -3.55 -5.65 -4.77 -5.7 1.15 -3.25 - -3.86 -1.75 -1.62 -1.52 - -1.22 3.84 -0.51 -0.26 -1.08 2.15 -1.49 -1.68 -0.59 -1.86 0.04 -1.35 -0.41 - - -2.07 -1.39 1.01 0.7 -0.26 -0.3 0.69 -0.23 0.74 -1.26 -1.31 -3.57 0.9 1.88 -0.73 1.47 -0.21 -0.42 0.3 -1.63 -0.18 -0.0 -0.77
-1.04 -1.36 -0.65 0.26 -4.34 -3.44 -3.89 -1.86 -2.92 -5.35 -4.6 -4.52 0.01 -6.57 -5.0 -4.43 -0.46 -1.08 -2.61 -3.08 -0.71 3.81 -0.65 -0.39 -0.43 0.82 -1.52 0.04 0.63 -0.83 -0.15 -0.18 -0.09 0.36 -0.49 -1.44 -0.74 1.34 -0.25 1.08 0.92 0.65 -0.65 -0.21 0.23 0.59 -3.42 0.45 1.35 -0.19 -0.18 -0.37 -0.46 -0.83 -0.08 -0.29 -0.47 -0.2

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.