Heatmap: Cluster_35 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - 1.33 - - 1.16 - - - - - 0.97 - - - - - - 1.2 - 2.47 3.32 0.52 -
- - - - - 1.1 - - - 0.74 0.79 0.95 - 0.27 - - - 0.27 - - 2.18 - 1.78 1.46 - 2.43
- - - - - 0.08 - - - - - - - - - - - - - - - - 4.11 2.95 - -
- - - - - - - - - - - - - 3.02 - - - - - - - - 4.16 - - -
-2.35 -0.83 -0.52 0.07 -0.17 -0.55 -0.37 0.32 0.02 -0.13 -0.29 -0.38 -1.68 -1.92 -0.85 -0.7 -0.91 0.12 0.33 -0.56 0.09 -3.8 2.31 1.3 0.44 0.23
-0.2 - - 1.12 - - - - - 1.6 - 0.19 - - 0.01 - 2.32 0.77 1.06 -0.22 1.75 - 2.02 - - -0.48
-0.9 -1.54 -0.58 -0.38 -2.23 -1.39 -0.99 -0.8 0.38 0.36 0.51 -0.27 0.32 0.16 0.24 -1.05 -1.1 0.63 -1.02 -2.96 -0.7 0.69 1.55 0.01 0.38 1.61
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
0.12 0.25 -0.72 1.7 - - 0.16 0.01 1.12 1.95 -0.98 0.75 - -1.53 - - - - - - 1.93 -1.34 2.32 - - -
- 0.92 - - - 1.04 - - 0.78 - - - - - - 0.77 - - - - 2.84 - 2.45 1.2 0.17 1.37
-2.53 -4.62 -3.71 -1.91 -2.25 -0.43 -0.48 -0.06 0.87 0.18 1.04 0.5 -2.22 -1.55 -4.39 -2.5 -3.63 -2.34 -2.36 -2.92 -0.8 -0.88 2.8 1.86 0.57 0.83
- - - - - - - - - - - - - - - - - - - - 3.55 - 3.83 - - -
-3.89 -2.64 -1.41 -1.21 -1.54 -1.34 -0.69 -1.17 -1.5 -2.12 -2.08 -0.91 -1.73 -1.07 -0.89 -0.8 0.15 1.53 0.61 0.6 -0.31 -0.44 1.94 0.01 1.93 1.42
-0.13 -1.17 -1.01 0.19 -0.79 -1.06 -0.52 -1.07 -0.3 -0.63 0.16 0.46 -1.08 -0.65 -1.97 -0.52 -1.46 -1.31 -1.09 -2.23 0.16 -0.2 2.26 2.04 0.25 0.29
-1.86 - -1.56 -1.6 - - - - -1.57 -1.64 -0.61 -1.47 - - - - -1.36 - -1.57 - -1.25 - 3.49 1.61 1.23 2.49
- - - - - - - - - -3.76 - -4.57 - -2.52 -3.77 -4.78 0.05 -0.96 -2.01 -2.39 0.92 -2.26 3.85 2.16 -1.15 1.11
-1.81 -3.24 -3.49 -3.41 - - - - -3.5 - -1.18 -3.39 - -2.85 -3.74 - 0.74 -1.77 -1.2 -0.5 0.19 -1.7 3.96 1.53 -1.33 0.24
-5.18 - -3.06 - -3.1 -0.98 - - -4.89 - -2.87 -2.2 - -4.24 -4.96 -4.9 -1.05 -1.83 -4.89 -5.26 0.84 0.85 3.71 2.28 -0.87 0.82
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-0.7 - - -1.61 - 0.84 -1.68 - -0.09 -1.8 -0.74 -0.59 - -0.34 0.78 0.21 -1.49 0.94 2.04 -1.06 1.24 -2.08 2.34 0.92 -1.36 -
- - - - - - - - - - - - 2.74 - - - - 2.7 - - 1.91 - 3.18 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-0.34 - - - -0.33 - - - - -0.08 - 0.05 - - - - - - 1.61 - 0.79 -0.43 3.65 - 1.29 0.97
0.23 1.66 0.47 0.32 - - - - 1.32 - - - 0.63 0.59 - - 0.44 - - - 1.43 - 3.24 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - 0.95 1.23 - 0.29 0.67 1.24 - 1.7 - 2.34 2.5 -0.3 0.81
- - -1.0 -0.92 - - - -1.11 - - 1.56 - -0.6 0.94 - 0.48 - -0.64 0.58 -1.32 1.73 -1.39 2.64 -0.39 -0.64 1.89
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-0.75 -0.59 -0.82 -0.85 -0.65 -1.09 -0.18 -0.23 0.19 0.56 0.64 0.61 -0.57 -0.73 -0.39 -0.27 -0.8 0.23 -0.03 -0.43 -0.64 0.53 1.67 0.55 0.05 -0.04
- - - - - - - - - - - - - - - - - - - - - - - - - -
-1.07 -2.14 -1.98 -0.34 0.23 -0.21 -0.15 0.06 0.29 -2.07 0.03 -1.87 -2.13 -0.66 0.31 -0.28 -1.02 -0.42 0.87 -0.05 0.41 -1.33 2.35 -1.11 0.62 0.79
-1.63 - -1.32 - -0.27 - - 0.31 - - 0.64 -0.21 -1.43 -0.98 - - - -0.99 -1.68 - 2.2 0.89 1.98 2.6 1.04 -0.86
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
0.8 - - - - - - - 1.72 - - - - - - - - - 3.19 - -0.27 - 3.46 - - -
-0.0 -0.45 -0.3 0.0 -0.27 -0.57 -2.41 -0.95 -0.55 0.62 - 0.07 0.8 0.27 0.19 -1.73 -1.06 1.16 -1.08 -0.52 -0.6 0.06 1.47 -0.23 0.18 1.16
- 3.27 - - - - - - - - - - - - - - - - - - - - 4.03 - - -
- - - - - - - - - - - - - - - - - - - - 3.53 - 3.85 - - -
- - -1.75 - - - - -3.13 - - - -3.25 -3.44 - - - - - -1.39 - -3.78 1.07 4.19 - 2.11 -2.33
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - 4.02 - 3.29 - - -
- - - - - - - - - 1.43 1.48 - - - - - - - - - - - 2.89 - - 3.71
-1.77 -3.18 -1.1 0.32 -0.44 -1.15 -1.43 -2.55 -2.78 -1.25 -0.79 1.03 -2.37 -0.21 0.07 0.11 -0.24 1.51 0.07 0.22 0.59 -0.29 1.87 -0.57 0.78 0.61
0.39 -0.43 -0.81 0.3 -0.63 -0.17 -0.39 -0.33 -0.42 0.01 0.49 0.39 -0.33 -1.57 -1.34 -3.32 -1.26 -0.93 -0.7 -2.29 -1.21 1.58 2.39 0.59 -1.05 -0.83
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-0.14 -0.62 -1.47 0.04 -0.23 -0.32 -0.38 -0.52 0.2 -0.83 -0.04 -0.32 -0.48 -1.1 -0.4 -0.49 -0.78 0.32 -0.42 -1.15 0.39 0.32 1.98 1.1 0.2 -0.01
0.09 -0.58 -0.84 -1.86 -2.2 0.34 0.45 -0.43 -0.28 0.48 0.1 -0.3 -0.9 0.09 0.37 -0.56 0.76 0.61 0.97 -0.07 -0.01 -4.3 1.28 -0.2 -1.19 0.33
- - - 0.9 0.72 - - - 0.87 - - - - - - - - - - - 3.25 2.15 2.75 - - -
-3.45 -3.1 -2.6 -0.96 -0.46 -0.52 -0.59 -0.02 0.52 0.7 0.31 -0.13 -2.22 -1.12 -1.09 -1.69 -0.7 -0.46 -0.63 -0.96 0.03 -0.86 2.33 1.85 0.93 -0.38
-5.06 - -2.05 -1.54 -3.07 -4.95 -3.86 -2.55 -0.88 -2.48 -0.98 -1.4 -4.01 - -3.29 - -3.47 -1.95 -0.64 -1.01 -0.52 -2.42 2.67 2.64 2.07 2.01
- - - - - - - - - - - - - - - - - - - - - - 3.85 3.53 - -
-0.82 -1.53 - -1.59 0.85 -1.77 -1.66 -0.71 - - 1.38 1.24 0.65 -0.93 - - - -2.21 -1.68 - 0.06 - 3.1 -1.77 1.21 0.95
-2.15 - -0.73 -0.77 -0.79 -0.71 - -1.82 -0.18 - -0.88 - - 0.11 0.78 -0.95 -0.64 1.45 0.35 -0.53 - -1.17 2.14 1.05 0.09 2.33
- 0.05 0.03 1.34 -0.3 -0.18 - - - - - - - - - -0.22 - -0.94 1.77 -0.57 0.4 2.04 2.79 0.41 -0.81 -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
1.2 - - 0.59 - 0.76 - - - - 1.46 2.2 - - - - 0.71 - 0.15 - 1.7 - 2.65 - -0.17 -
- -0.45 - 0.93 0.16 - 2.32 - 1.1 -0.14 - - - - - - - - 1.9 - - 1.26 3.01 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-0.36 0.01 -2.27 0.14 0.89 -1.54 - -0.04 -2.51 - -1.57 -2.39 -1.33 -0.28 -1.59 -0.96 - 0.29 -1.17 -1.26 1.31 1.91 1.8 1.37 0.6 0.1
- - - - 0.87 - - - - - - 1.78 0.57 - 0.42 0.57 - 0.09 - - 2.28 - 3.09 - 1.0 -
- - - 1.96 1.07 - - - - - - - - - - - - 0.14 - 1.51 1.92 - 2.22 1.49 1.21 1.31
- - - - - - - - - - - - - 1.04 2.53 - - - - - 3.37 - 2.97 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- 0.9 -0.12 -1.29 1.12 - - -1.22 - - 0.51 -1.15 -0.05 - - - - -1.99 -1.59 - 1.94 -0.31 2.16 1.36 1.12 1.55
- - - - - - 2.05 - - 1.55 - - - - - - - 1.06 - - 3.19 - 2.52 - 0.98 -
-1.46 -1.1 -0.66 -0.27 -1.18 -0.48 -0.33 -0.07 -0.08 -0.94 0.02 -0.01 -1.08 -0.52 -0.45 -0.09 -3.2 0.38 -0.38 -1.26 -0.5 -1.18 2.49 1.56 -0.15 0.36
- - - - - - -1.2 - -1.22 -0.68 -2.28 - -1.81 0.27 2.14 -0.64 -0.42 2.18 1.6 - 1.09 -1.46 1.5 - 1.77 -0.47
- - 2.17 - - - - - - - - - 2.38 - - - - - - - 2.88 - 3.16 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- 1.25 - - - - - 0.1 - - 0.09 - - - - - - - - - 3.24 - 3.33 - 0.99 -
- - - -3.68 -3.73 -2.22 -1.37 -1.08 0.36 1.17 0.96 0.17 -4.23 -1.69 -2.84 -1.77 -3.52 -3.2 -2.77 -2.66 0.75 - 2.94 2.57 -1.69 0.35
-0.64 -1.84 -1.6 -1.11 -1.22 -0.12 -0.1 -0.57 0.02 0.56 0.32 0.23 -0.45 -0.16 0.37 -0.3 -1.26 0.44 -0.13 -0.08 -0.96 -0.34 2.05 0.56 -1.28 0.78
- - - - - - - - - - 1.8 - - - - - 1.84 - - - - - 3.21 - 1.25 2.87
- - - 2.09 - - - 2.43 - 1.4 - - - - - - - - - - 1.61 - 2.77 0.95 - 0.92
-0.22 - - - - - - -0.94 0.85 -1.2 - - - - - -1.01 -1.18 - -1.16 -1.47 - - 4.26 - - 0.6
0.49 -0.07 - - - - - - -0.16 - - - - - - - -0.01 - 0.72 - 2.82 - 3.51 - -0.88 0.21
- - - - - - - - - - 3.29 - - - - - - - - - - - 4.02 - - -
0.66 -0.69 -4.23 -2.5 0.12 0.15 -0.27 -1.39 0.41 0.78 0.28 0.71 0.83 -1.19 -4.32 -1.82 -1.65 -0.08 -0.55 -1.33 -0.04 -0.86 2.31 0.18 0.13 -0.63
-0.91 -1.06 -0.9 -0.42 -0.17 0.14 -0.21 -0.23 0.28 0.03 -0.86 -0.39 -3.91 -0.29 -0.49 0.09 -0.04 0.08 1.33 0.26 0.19 -1.62 1.37 0.65 0.19 0.35
- - -0.71 -0.64 -0.52 - -0.26 -0.5 - -0.83 -0.75 0.38 -0.82 -1.3 - 1.61 1.07 -1.26 -1.07 - -0.12 0.48 2.66 1.47 -1.33 0.32
-0.57 -0.72 -1.25 -1.66 -1.69 -1.84 -1.54 -1.29 -1.03 -0.37 -0.18 0.53 -0.93 -0.75 -0.58 -0.93 -1.46 -0.8 -0.22 -1.31 0.06 -3.5 2.51 2.03 1.07 0.6
- - - - - - 2.88 2.7 - - - - - - - - - - - - - - 3.6 - - -
1.7 0.02 -0.56 - - -0.31 1.32 - -0.52 0.32 - - -0.67 - - - 0.67 - -0.57 - 2.49 0.63 2.27 - - -0.1
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- 0.79 -0.35 - - -0.1 - - - 0.57 - 0.75 -0.45 0.0 0.57 - - -1.09 0.3 - -0.33 1.87 2.62 0.26 0.04 0.74
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- 0.33 - - - - - - 0.18 - - - - - - - - -0.35 - - 1.01 - 4.05 2.08 - -
- - - -1.59 - - - - -0.06 -1.76 - - - -1.84 - - -1.47 -0.73 - - -2.66 - 3.72 2.55 0.99 0.97
- - - - 1.84 - -0.11 0.95 -0.52 - -0.56 0.54 -0.17 - -0.65 - - -0.71 0.08 - 0.18 1.75 2.2 1.04 0.56 -0.1
- - - - - - -1.25 - -1.21 - -0.33 -1.16 - - - - - -2.0 - - 0.1 -0.07 3.19 2.67 1.68 1.55
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - 1.39 1.49 - - - - - - - - - 2.3 - 3.14 2.77 - -
-0.85 -1.34 -2.69 -0.52 -0.57 0.63 -0.32 0.54 0.86 0.3 0.51 -0.5 -1.02 - 0.79 -2.02 -2.95 -0.5 -3.27 - 0.63 1.06 2.13 -2.31 0.66 0.45
- - - - - - - - - - - - - - 1.61 - - -0.05 - - 1.54 - 2.57 2.95 1.69 1.12
- - - - - - - - 1.27 - - 1.37 - - - - - 0.69 2.07 - 1.61 0.88 3.36 - - -
- - - - - 1.05 - - - 0.99 - - 0.93 1.39 0.95 - - - - - 2.53 - 1.96 1.64 1.42 -
- - - - - - - - - - 1.01 - - - - - - - 1.01 - 0.64 - 4.15 - 1.4 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.