Sequence Description Alias PCC hrr AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.9594570516002524 2 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.9554191336745604 2 AT3G01500 carbonic anhydrase 1 CA1, ATBCA1, SABP3, ATSABP3 0.9434026165923817 3 AT3G54050 high cyclic electron flow 1 HCEF1 0.9352814010601029 4 AT3G63140 chloroplast stem-loop binding protein of 41 kDa CSP41A 0.9264344422277601 5 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.9257943524301053 6 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.9166479981875626 7 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 GAPA-2 0.9163211056435063 8 AT5G35630 glutamine synthetase 2 GS2, ATGSL1, GLN2 0.9150301474503012 9 AT1G15980 NDH-dependent cyclic electron flow 1 NDH48, NDF1 0.9071933141274932 10 AT1G32080 membrane protein, putative 0.9060722382087005 11 AT1G11860 Glycine cleavage T-protein family 0.9058206258762428 12 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.9057405550911543 13 AT3G12780 phosphoglycerate kinase 1 PGK1 0.9048853865152963 14 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.9030463171382848 15 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.9030463171382848 16 AT4G37930 serine transhydroxymethyltransferase 1 STM, SHM1, SHMT1 0.8990861209360261 17 AT1G44575 Chlorophyll A-B binding family protein NPQ4, PSBS 0.8984566422923332 18 AT2G39470 PsbP-like protein 2 PPL2 0.8971369119812708 19 AT5G07020 proline-rich family protein 0.8964017079672397 20 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.8959432874873816 21 AT4G03280 photosynthetic electron transfer C PGR1, PETC 0.8929306258299442 22 AT5G38420 Ribulose bisphosphate carboxylase (small chain) family protein 0.8927457143715006 23 AT2G39730 rubisco activase RCA 0.8915862627286826 24 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 PMDH2 0.8887622213625088 25 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8878975242956925 26 AT1G32060 phosphoribulokinase PRK 0.8870219486645519 27 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8855126116736566 28 AT2G46820 photosystem I P subunit PTAC8, TMP14, PSI-P, PSAP 0.8846174970522013 29 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8805092643361444 30 AT1G20340 Cupredoxin superfamily protein DRT112, PETE2 0.8800904826825882 31 AT5G38410 Ribulose bisphosphate carboxylase (small chain) family protein 0.8781182373646784 32 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8777012556433224 33 AT3G26650 glyceraldehyde 3-phosphate dehydrogenase A subunit GAPA-1, GAPA 0.8760005978646063 34 AT1G55480 protein containing PDZ domain, a K-box domain, and a TPR region ZKT 0.8722081506156844 35 AT1G64770 NDH-dependent cyclic electron flow 1 NDH45, NDF2 0.8719667558997548 36 AT1G67090 ribulose bisphosphate carboxylase small chain 1A RBCS1A 0.8715417636042188 37 AT3G62030 rotamase CYP 4 ROC4 0.8704842595260385 38 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.8684744244542322 39 AT3G46780 plastid transcriptionally active 16 PTAC16 0.8677026386155949 40 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein EDA3 0.8667443674422373 41 AT1G74730 Protein of unknown function (DUF1118) 0.8667074656463255 42 AT4G09650 ATP synthase delta-subunit gene ATPD 0.8654359053676342 43 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, LHCA6 0.8650861289268107 44 AT4G38970 fructose-bisphosphate aldolase 2 FBA2 0.8644632546163991 45 AT1G70760 inorganic carbon transport protein-related CRR23 0.8641097219149975 46 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.863648272844625 47 AT2G21330 fructose-bisphosphate aldolase 1 FBA1 0.8622478744133399 48 AT1G50320 thioredoxin X THX, ATHX, ATX 0.8580567523779106 49 AT1G65230 Uncharacterized conserved protein (DUF2358) 0.8565994653613166 50 AT1G34000 one-helix protein 2 OHP2 0.8542143622737647 51 AT3G10060 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8513898101532765 52 AT4G02530 chloroplast thylakoid lumen protein 0.850718907050041 53 AT1G18060 unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8492277334488126 54 AT3G02730 thioredoxin F-type 1 ATF1, TRXF1 0.8483501522138718 55 AT5G16710 dehydroascorbate reductase 1 DHAR3 0.8480564466169506 56 AT1G77090 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 0.8478848897448044 57 AT4G22890 PGR5-LIKE A PGR5-LIKE A 0.8459098514303229 58 AT3G14420 Aldolase-type TIM barrel family protein 0.8454848410729794 59 AT1G32470 Single hybrid motif superfamily protein 0.8452841649357631 60 AT2G20890 photosystem II reaction center PSB29 protein PSB29, THF1 0.8449778682821352 61 AT1G14150 PsbQ-like 2 PQL1, PQL2 0.843646682777074 62 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8434915502178597 63 AT5G08050 Protein of unknown function (DUF1118) 0.8433413168989277 64 AT5G19220 ADP glucose pyrophosphorylase large subunit 1 APL1, ADG2 0.8429522442739089 65 AT2G04039 unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 0.842584393098226 66 AT5G23120 photosystem II stability/assembly factor, chloroplast (HCF136) HCF136 0.8425838791945903 67 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8423795548367146 68 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.8423626683509075 69 AT4G04640 ATPase, F1 complex, gamma subunit protein ATPC1 0.8419015795370394 70 AT3G12345 unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 0.8401884170479266 71 AT4G09350 Chaperone DnaJ-domain superfamily protein 0.8391383844976849 72 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.8388959354204325 73 AT3G59780 Rhodanese/Cell cycle control phosphatase superfamily protein 0.8387752676289004 74 AT1G62750 Translation elongation factor EFG/EF2 protein ATSCO1/CPEF-G, SCO1, ATSCO1 0.8385119864435712 75 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8381927699327963 76 AT1G73060 Low PSII Accumulation 3 LPA3 0.8375117427742472 77 AT3G50820 photosystem II subunit O-2 OEC33, PSBO-2, PSBO2 0.836717617089321 78 AT1G54780 thylakoid lumen 18.3 kDa protein TLP18.3 0.8365662389889205 79 AT3G14415 Aldolase-type TIM barrel family protein 0.8356077466642247 80 AT3G47070 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8355354532453763 81 AT3G55330 PsbP-like protein 1 PPL1 0.8354643891100281 82 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GC1, SULA 0.8354626303613989 83 AT1G60950 2Fe-2S ferredoxin-like superfamily protein FED A, ATFD2 0.8337135795938323 84 AT1G26220 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.8309050718244868 85 AT1G77490 thylakoidal ascorbate peroxidase TAPX 0.8292413189003022 86 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8289930730130014 87 AT1G06680 photosystem II subunit P-1 OE23, OEE2, PSBP-1, PSII-P 0.8287020568845943 88 AT1G03630 protochlorophyllide oxidoreductase C POR C, PORC 0.8284154912162666 89 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.8277191204621583 90 AT3G11630 Thioredoxin superfamily protein 0.8271215808753781 91 AT4G20360 RAB GTPase homolog E1B ATRAB8D, ATRABE1B, RABE1b 0.8256792071234155 92 AT5G38430 Ribulose bisphosphate carboxylase (small chain) family protein 0.8251706798522471 93 AT4G09010 ascorbate peroxidase 4 APX4, TL29 0.8251354666911481 94 AT1G22850 SNARE associated Golgi protein family 0.824999298165689 95 AT5G12860 dicarboxylate transporter 1 DiT1 0.8247840669830797 96 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 0.8239775366696658 97 AT3G26570 phosphate transporter 2;1 PHT2;1, ORF02 0.8239023134588048 98 AT5G08650 Small GTP-binding protein 0.8236512394687482 99 AT5G20140 SOUL heme-binding family protein 0.82364186440586 100