Sequence Description Alias PCC hrr AT2G35370 glycine decarboxylase complex H GDCH 0.9179290745791747 2 AT1G32470 Single hybrid motif superfamily protein 0.9159134330085539 5 AT4G34190 stress enhanced protein 1 SEP1 0.9154168994149168 3 AT1G76450 Photosystem II reaction center PsbP family protein 0.9115340944904885 4 AT3G62030 rotamase CYP 4 ROC4 0.9071265432643544 5 AT3G55330 PsbP-like protein 1 PPL1 0.9035765182956571 6 AT1G43560 thioredoxin Y2 Aty2, ty2 0.9015181841890397 7 AT5G45680 FK506-binding protein 13 ATFKBP13, FKBP13 0.8990820827869854 10 AT1G11860 Glycine cleavage T-protein family 0.898884767827716 10 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8932227611783442 10 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.892440893488717 18 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.8876940078228386 27 AT3G26060 Thioredoxin superfamily protein ATPRX Q 0.8859131161520312 13 AT3G26710 cofactor assembly of complex C CCB1 0.8858436791009995 14 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8856786621035401 15 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein EDA3 0.8845707093556565 16 AT3G54050 high cyclic electron flow 1 HCEF1 0.8828044884827645 32 AT2G39470 PsbP-like protein 2 PPL2 0.8822034649841978 30 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.8803322076839166 19 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.8782928331361877 20 AT1G74730 Protein of unknown function (DUF1118) 0.8780165140885956 21 AT2G20890 photosystem II reaction center PSB29 protein PSB29, THF1 0.8780084330223275 22 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8776713178218853 23 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.8753171876385692 29 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.8743729081829473 25 AT4G28660 photosystem II reaction center PSB28 protein PSB28 0.8736484785124218 26 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.8731261912292054 40 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.8721200032580756 28 AT4G13500 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8696790360848029 29 AT1G44575 Chlorophyll A-B binding family protein NPQ4, PSBS 0.8686004996577961 30 AT1G18730 NDH dependent flow 6 NDF6 0.8676181336276494 31 AT1G73060 Low PSII Accumulation 3 LPA3 0.8656684552995191 32 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8650945932759644 33 AT4G21210 PPDK regulatory protein ATRP1, RP1 0.8646775580470298 34 AT1G50450 Saccharopine dehydrogenase 0.8627458127946986 35 AT5G40950 ribosomal protein large subunit 27 RPL27 0.862087645608296 36 AT5G08050 Protein of unknown function (DUF1118) 0.8588644125385052 37 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8583182136918025 38 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related protein 0.8577996107829972 39 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.8569078606012712 47 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8565974568485478 41 AT1G32550 2Fe-2S ferredoxin-like superfamily protein FdC1 0.8551776189618856 42 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.8544255545181559 43 AT3G16250 NDH-dependent cyclic electron flow 1 NDF4 0.8543741172816617 44 AT4G20360 RAB GTPase homolog E1B ATRAB8D, ATRABE1B, RABE1b 0.8540734197043532 45 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.8539128374500178 46 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8535534818889738 47 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.8531776596492505 48 AT1G55480 protein containing PDZ domain, a K-box domain, and a TPR region ZKT 0.8531065649815716 49 AT5G07020 proline-rich family protein 0.8526906845768524 50 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8508618184060971 51 AT1G09340 chloroplast RNA binding CRB, HIP1.3, CSP41B 0.850718907050041 53 AT2G01590 chlororespiratory reduction 3 CRR3 0.8503423066354441 53 AT3G25920 ribosomal protein L15 RPL15 0.8499621473164912 60 AT4G10300 RmlC-like cupins superfamily protein 0.8491645080422593 55 AT3G01480 cyclophilin 38 ATCYP38, CYP38 0.8470453371752544 56 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8467854792868086 57 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.8467854792868086 58 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.8464879325967187 59 AT1G04640 lipoyltransferase 2 LIP2 0.8464157312198348 60 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GC1, SULA 0.8457086177054043 61 AT4G09650 ATP synthase delta-subunit gene ATPD 0.8456922127987233 62 AT1G54500 Rubredoxin-like superfamily protein 0.8448552151173682 63 AT2G21530 SMAD/FHA domain-containing protein 0.8447957980783609 64 AT1G32080 membrane protein, putative 0.8444068894912976 65 AT1G03630 protochlorophyllide oxidoreductase C POR C, PORC 0.8441633979601255 66 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8439771928555151 67 AT1G16880 uridylyltransferase-related 0.843638019369439 68 AT3G54210 Ribosomal protein L17 family protein 0.8432447405011295 69 AT4G09010 ascorbate peroxidase 4 APX4, TL29 0.8426828621129149 70 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 GAPA-2 0.8407362748769273 71 AT4G22830 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 0.8402190146637413 72 AT3G11630 Thioredoxin superfamily protein 0.8400924283004843 73 AT1G18170 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.839782018633176 74 AT5G17170 rubredoxin family protein ENH1 0.8393343891658779 75 AT3G59780 Rhodanese/Cell cycle control phosphatase superfamily protein 0.8381543257914903 76 AT5G30510 ribosomal protein S1 RPS1, ARRPS1 0.8380637897996067 77 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8365553349382067 78 AT2G32640 Lycopene beta/epsilon cyclase protein 0.836416312025111 79 AT5G16710 dehydroascorbate reductase 1 DHAR3 0.8336529828589936 80 AT5G20140 SOUL heme-binding family protein 0.8332387529580627 81 AT1G05190 Ribosomal protein L6 family emb2394 0.8325766705370983 82 AT1G75350 Ribosomal protein L31 emb2184 0.8323471529378673 83 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8316092473986132 84 AT4G18480 P-loop containing nucleoside triphosphate hydrolases superfamily protein CH42, CHLI1, CH-42, CHL11, CHLI-1 0.8314803067775353 85 AT2G28605 Photosystem II reaction center PsbP family protein 0.8301952277068279 86 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, LHCA6 0.8297007882000395 87 AT1G15980 NDH-dependent cyclic electron flow 1 NDH48, NDF1 0.8291364565875402 88 AT3G02730 thioredoxin F-type 1 ATF1, TRXF1 0.8272121235428388 89 AT5G08650 Small GTP-binding protein 0.8260191562515989 90 AT5G19220 ADP glucose pyrophosphorylase large subunit 1 APL1, ADG2 0.8258697011308276 91 AT3G52380 chloroplast RNA-binding protein 33 PDE322, CP33 0.8258165009115959 92 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 0.8241939356440358 93 AT5G38430 Ribulose bisphosphate carboxylase (small chain) family protein 0.824086587300965 94 AT5G23120 photosystem II stability/assembly factor, chloroplast (HCF136) HCF136 0.8238018811494159 95 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 0.8232995136442512 96 AT1G70760 inorganic carbon transport protein-related CRR23 0.8231356896214937 97 AT3G12780 phosphoglycerate kinase 1 PGK1 0.8230912437663097 98 AT1G64770 NDH-dependent cyclic electron flow 1 NDH45, NDF2 0.8218487442411286 99 AT2G48070 resistance to phytophthora 1 RPH1 0.8217504572238857 100