Sequence Description Alias PCC hrr AT1G32470 Single hybrid motif superfamily protein 0.9422233281068311 2 AT4G02530 chloroplast thylakoid lumen protein 0.9179290745791747 2 AT4G34190 stress enhanced protein 1 SEP1 0.9106226075503061 3 AT3G55330 PsbP-like protein 1 PPL1 0.9080486993863932 4 AT3G16250 NDH-dependent cyclic electron flow 1 NDF4 0.9005218747315499 5 AT5G45680 FK506-binding protein 13 ATFKBP13, FKBP13 0.9000083388209279 7 AT1G11860 Glycine cleavage T-protein family 0.8954331947866615 13 AT2G39470 PsbP-like protein 2 PPL2 0.8943929650069162 18 AT2G21530 SMAD/FHA domain-containing protein 0.8894021143453524 9 AT4G10300 RmlC-like cupins superfamily protein 0.8865371489476138 10 AT1G16880 uridylyltransferase-related 0.8844861995268445 11 AT1G76450 Photosystem II reaction center PsbP family protein 0.8826367548743385 12 AT5G17170 rubredoxin family protein ENH1 0.8794895061647328 13 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.87640286774461 14 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8754329471592993 15 AT1G70760 inorganic carbon transport protein-related CRR23 0.8743967809970065 16 AT1G43560 thioredoxin Y2 Aty2, ty2 0.8742007282812042 17 AT1G14150 PsbQ-like 2 PQL1, PQL2 0.8730313010215022 18 AT1G18730 NDH dependent flow 6 NDF6 0.8718708673288619 19 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related protein 0.871081860076302 20 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.8695035486359786 58 AT1G18170 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.868924749201685 22 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.8671185892495844 23 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8666965727160906 24 AT3G01440 PsbQ-like 1 PQL1, PQL2 0.865463392461167 25 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein EDA3 0.8647223219875698 29 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8636197088357918 27 AT3G26060 Thioredoxin superfamily protein ATPRX Q 0.8619375200257694 28 AT1G04640 lipoyltransferase 2 LIP2 0.860914208456229 29 AT4G13500 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8590948485040831 30 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.8569657300663152 31 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain family protein 0.8553701063250909 32 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8549434974516177 44 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.8539033967718842 67 AT1G54500 Rubredoxin-like superfamily protein 0.8519647241043831 35 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.8502679768513433 65 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.8494996016731898 41 AT3G47070 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.848095507161482 38 AT2G01590 chlororespiratory reduction 3 CRR3 0.8472503860225509 39 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.8468024642518357 59 AT3G62030 rotamase CYP 4 ROC4 0.8448775844308372 49 AT3G26710 cofactor assembly of complex C CCB1 0.844030514992426 42 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.8426148188444882 43 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8365653256467209 64 AT4G18370 DEGP protease 5 HHOA, DEG5, DEGP5 0.8358962399336525 45 AT1G32550 2Fe-2S ferredoxin-like superfamily protein FdC1 0.8353394075284738 46 AT4G12830 alpha/beta-Hydrolases superfamily protein 0.8334219843156969 47 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8330785864139248 64 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.8330785864139248 64 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, LHCA6 0.8319522438081138 63 AT5G08050 Protein of unknown function (DUF1118) 0.83072573335413 55 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.8286898814533648 58 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.8279559659268407 90 AT1G74730 Protein of unknown function (DUF1118) 0.8276263327414253 90 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.827284382269945 98 AT1G73060 Low PSII Accumulation 3 LPA3 0.826191216031097 57 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.8241974193463797 58 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8236839535609479 59 AT2G28605 Photosystem II reaction center PsbP family protein 0.8229350477244396 60 AT1G27480 alpha/beta-Hydrolases superfamily protein 0.8228636670743784 61 AT4G21210 PPDK regulatory protein ATRP1, RP1 0.8215717214501929 62 AT2G17695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 0.8212272961918785 63 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8210601752830806 95 AT5G38420 Ribulose bisphosphate carboxylase (small chain) family protein 0.8196851942681614 65 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8194777086114784 71 AT3G44020 thylakoid lumenal P17.1 protein 0.8187721435318 67 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8179002442863875 84 AT4G28660 photosystem II reaction center PSB28 protein PSB28 0.816596134782459 69 AT4G39710 FK506-binding protein 16-2 FKBP16-2 0.8146318438187752 71 AT5G39210 chlororespiratory reduction 7 CRR7 0.8143817585839077 72 AT5G20935 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8139917362759668 73 AT4G37925 subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex NDH-M 0.8117564287699 74 AT5G52780 Protein of unknown function (DUF3464) 0.8111278906666124 75 AT1G31190 myo-inositol monophosphatase like 1 IMPL1 0.8110369430231106 76 AT1G03680 thioredoxin M-type 1 ATHM1, THM1, TRX-M1, ATM1 0.810057421479704 77 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein 0.8099840357100107 78 AT1G75350 Ribosomal protein L31 emb2184 0.8099044462248939 79 AT5G07020 proline-rich family protein 0.8089273916335445 97 AT5G23120 photosystem II stability/assembly factor, chloroplast (HCF136) HCF136 0.8077751928497083 83 AT2G48070 resistance to phytophthora 1 RPH1 0.807475604375835 84 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.8072805529464386 86 AT1G50450 Saccharopine dehydrogenase 0.8066667423584403 86 AT5G51010 Rubredoxin-like superfamily protein 0.8060204576873415 87 AT1G32080 membrane protein, putative 0.804307175565565 88 AT1G64770 NDH-dependent cyclic electron flow 1 NDH45, NDF2 0.8032750412453412 100 AT4G22830 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 0.8016811021956535 92 AT5G39830 Trypsin family protein with PDZ domain DEGP8, DEG8 0.8011716507605896 93 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.799079679832302 95 AT2G32640 Lycopene beta/epsilon cyclase protein 0.798929408751604 97 AT5G38430 Ribulose bisphosphate carboxylase (small chain) family protein 0.7979924994593349 99 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 0.7979493612324638 100