Sequence Description Alias PCC hrr AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.9412244096775217 1 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9379258525508112 24 AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.9356721899814935 5 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.933961618512399 4 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9335864809240233 5 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9333671745545461 6 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9322678420018464 17 AMTR_s00066p00130420 Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.123 0.9316335967659329 8 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9300888119101289 9 AMTR_s00048p00224070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED34 component evm_27.TU.AmTr_v1.0_scaffold00048.212 0.9294149103613284 22 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9274397450591221 33 AMTR_s00007p00268660 evm_27.TU.AmTr_v1.0_scaffold00007.394 0.9271064358678535 12 AMTR_s00099p00147110 evm_27.TU.AmTr_v1.0_scaffold00099.133 0.9241728588834337 31 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.9241455149133707 56 AMTR_s00001p00224830 evm_27.TU.AmTr_v1.0_scaffold00001.236 0.9224930099467205 15 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00062.184 0.9210365521782283 16 AMTR_s00016p00133200 evm_27.TU.AmTr_v1.0_scaffold00016.91 0.9210173429889911 63 AMTR_s00025p00212870 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00025.284 0.9202007876871943 26 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9189162495526753 51 AMTR_s00177p00048180 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00177.25 0.9185317341400151 20 AMTR_s00080p00074320 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00080.23 0.9182239087756688 50 AMTR_s00033p00106440 RNA processing.RNA modification.rRNA/tRNA methylation.TRM61-TRM6 tRNA adenosine-methyltransferase complex.TRM6 component evm_27.TU.AmTr_v1.0_scaffold00033.50 0.9158426796265067 22 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9156579835791316 29 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.9152026209940649 56 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit evm_27.TU.AmTr_v1.0_scaffold00039.46 0.9149676745347248 25 AMTR_s00102p00018040 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1) evm_27.TU.AmTr_v1.0_scaffold00102.3 0.9145714210845932 44 AMTR_s00033p00075910 evm_27.TU.AmTr_v1.0_scaffold00033.33 0.9145608301264051 27 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.9145474074387833 28 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9145330351447655 29 AMTR_s00009p00240120 Coenzyme metabolism.FMN/FAD biosynthesis.pyrimidine deaminase (RibD) evm_27.TU.AmTr_v1.0_scaffold00009.211 0.9138220739697738 31 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9136264115234388 32 AMTR_s00045p00168580 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class I/Ez histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00045.200 0.9129734976839203 60 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.43 0.9127784897463708 36 AMTR_s00021p00172560 Apoptosis inhibitor 5-like protein API5 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00021.126 0.9126984494872986 85 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9114974950135672 63 AMTR_s00106p00129110 evm_27.TU.AmTr_v1.0_scaffold00106.98 0.9093605911126599 39 AMTR_s00088p00159600 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00088.130 0.9090613653633357 40 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9080976506157872 43 AMTR_s00030p00238130 evm_27.TU.AmTr_v1.0_scaffold00030.204 0.907936969629492 44 AMTR_s00068p00165420 evm_27.TU.AmTr_v1.0_scaffold00068.119 0.9075405379433612 45 AMTR_s00092p00062310 Coenzyme metabolism.NAD/NADP biosynthesis.NAD synthase evm_27.TU.AmTr_v1.0_scaffold00092.27 0.9071929538831468 64 AMTR_s00130p00019530 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00130.4 0.9066854003016938 47 AMTR_s00088p00069780 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00088.41 0.906173894910922 48 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.9059646314196753 49 AMTR_s00099p00062060 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease H1 evm_27.TU.AmTr_v1.0_scaffold00099.41 0.9058982551473472 50 AMTR_s00095p00125060 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN2 component evm_27.TU.AmTr_v1.0_scaffold00095.82 0.9057483415252985 51 AMTR_s00065p00054920 Proline iminopeptidase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.28 0.9057070597011955 52 AMTR_s00002p00262620 evm_27.TU.AmTr_v1.0_scaffold00002.463 0.905368037554804 53 AMTR_s00070p00097310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase evm_27.TU.AmTr_v1.0_scaffold00070.48 0.9043553130701663 62 AMTR_s00096p00135790 evm_27.TU.AmTr_v1.0_scaffold00096.86 0.9034134801658632 59 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9032492594100284 57 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.9030174560674903 58 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.9024295841005078 59 AMTR_s00057p00185220 Probable serine/threonine-protein phosphatase 2A regulatory subunit B subunit TON2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.200 0.9022685795416335 75 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9019536177699524 61 AMTR_s00049p00163880 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.150 0.9010434771427274 63 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9009160681669074 72 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.9004196996567526 65 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.8992892285928129 84 AMTR_s00119p00070790 Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group evm_27.TU.AmTr_v1.0_scaffold00119.52 0.898712877644142 69 AMTR_s00078p00065640 evm_27.TU.AmTr_v1.0_scaffold00078.39 0.8980739014023457 71 AMTR_s00036p00227770 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00036.169 0.897801948458933 72 AMTR_s00058p00198540 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00058.200 0.8975987284217626 73 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8975833921242502 74 AMTR_s00011p00243170 Transcription factor GTE6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.139 0.8972725242646223 77 AMTR_s00111p00017920 evm_27.TU.AmTr_v1.0_scaffold00111.3 0.8972508669894966 78 AMTR_s00049p00225390 RNA processing.RNA modification.pseudouridylation.TruB-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00049.270 0.897184143347081 80 AMTR_s00155p00027590 Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.11 0.8970004760159778 82 AMTR_s00056p00172610 Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.150 0.8969180833360897 83 AMTR_s00003p00213880 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase evm_27.TU.AmTr_v1.0_scaffold00003.207 0.896913005200721 84 AMTR_s00062p00195710 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component evm_27.TU.AmTr_v1.0_scaffold00062.205 0.8968874274420656 85 AMTR_s00010p00236880 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00010.287 0.8968606200633361 86 AMTR_s00010p00155930 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00010.118 0.8966921897791196 89 AMTR_s00101p00092140 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.ALADIN scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00101.69 0.8965764167251519 90 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.8963118905450418 91 AMTR_s00066p00197720 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.260 0.8959506163567833 92 AMTR_s00058p00181770 Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.172 0.8959252023300406 93 AMTR_s00016p00241100 ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.254 0.8957727927685889 94 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.8954193747339766 97 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component evm_27.TU.AmTr_v1.0_scaffold00077.138 0.895404607165488 98 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.8950652908072169 100