Sequence Description Alias PCC hrr AMTR_s00066p00084950 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.66 0.9546692136331886 1 AMTR_s00044p00164390 Histone-binding protein MSI1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.179 0.9507627088813196 3 AMTR_s00104p00054580 Vesicle trafficking.endomembrane trafficking.post-Golgi trafficking.SCD complex.SCD1 protein evm_27.TU.AmTr_v1.0_scaffold00104.16 0.9490168002979688 3 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00060.71 0.9462964784113627 4 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9448596854406925 5 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor evm_27.TU.AmTr_v1.0_scaffold00122.38 0.9417680842036676 6 AMTR_s00063p00100200 PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00063.17 0.940166168635386 7 AMTR_s00002p00059110 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB4 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00002.23 0.9371241707046855 8 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9346459155830666 40 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9345191826436405 10 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component evm_27.TU.AmTr_v1.0_scaffold00138.19 0.93328226258915 18 AMTR_s00011p00229900 evm_27.TU.AmTr_v1.0_scaffold00011.109 0.9330920853864885 12 AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9299943259387049 15 AMTR_s00088p00115810 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate synthetase evm_27.TU.AmTr_v1.0_scaffold00088.82 0.9289613552317565 14 AMTR_s00001p00270540 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00001.464 0.9289134294147883 15 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9276554813716453 16 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9273661914913498 17 AMTR_s00038p00088230 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00038.43 0.9269076548847659 18 AMTR_s00105p00039650 evm_27.TU.AmTr_v1.0_scaffold00105.16 0.9262672164677868 19 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.9262411393704032 20 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9242825152281922 33 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.9232609553405667 38 AMTR_s00001p00272900 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.9218978066220309 23 AMTR_s00064p00050700 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00064.11 0.9215616746858212 24 AMTR_s00003p00020850 Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.6 0.9209402995503863 42 AMTR_s00025p00038580 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.XPD-type subunit evm_27.TU.AmTr_v1.0_scaffold00025.17 0.9201450025571698 26 AMTR_s00092p00098010 evm_27.TU.AmTr_v1.0_scaffold00092.55 0.9199302336532903 27 AMTR_s00021p00207790 evm_27.TU.AmTr_v1.0_scaffold00021.180 0.9198360760985558 28 AMTR_s00138p00108220 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component evm_27.TU.AmTr_v1.0_scaffold00138.52 0.9194490641889653 33 AMTR_s00164p00059220 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.VSR vacuolar sorting receptor evm_27.TU.AmTr_v1.0_scaffold00164.25 0.9187864945507648 30 AMTR_s00019p00154210 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor evm_27.TU.AmTr_v1.0_scaffold00019.143 0.9187598984409339 31 AMTR_s00148p00090060 Helicase protein MOM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.61 0.9180056710317003 32 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme evm_27.TU.AmTr_v1.0_scaffold00002.109 0.917830609555115 38 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9174287777085735 34 AMTR_s00009p00260060 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) evm_27.TU.AmTr_v1.0_scaffold00009.318 0.9168143069043577 35 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.80 0.9165546195937223 36 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9163231723473299 37 AMTR_s00044p00033620 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Etl1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00044.10 0.9152897827257798 39 AMTR_s00001p00246890 evm_27.TU.AmTr_v1.0_scaffold00001.300 0.9151602082843354 40 AMTR_s00021p00078920 Protein modification.phosphorylation.SCY1 kinase evm_27.TU.AmTr_v1.0_scaffold00021.35 0.9147668522318598 41 AMTR_s00059p00105450 evm_27.TU.AmTr_v1.0_scaffold00059.80 0.9147513353501544 42 AMTR_s00025p00221910 External stimuli response.drought.stomatal closure signalling.CAU1 histone methylase evm_27.TU.AmTr_v1.0_scaffold00025.311 0.9145684521258556 43 AMTR_s00049p00084680 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.extensins (EXTs).glycosylation.EXT serine O-alpha-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00049.55 0.9142149099681339 44 AMTR_s00115p00126760 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00115.20 0.9138293821957055 45 AMTR_s00108p00104150 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins evm_27.TU.AmTr_v1.0_scaffold00108.20 0.9135381034760176 46 AMTR_s00076p00078090 Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00076.20 0.9135349376678362 47 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9134476913438394 63 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.78 0.9132011358238307 49 AMTR_s00046p00168380 Flowering time control protein FCA OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.92 0.9131347852832609 50 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component evm_27.TU.AmTr_v1.0_scaffold00111.21 0.9129235208392825 51 AMTR_s00020p00207770 evm_27.TU.AmTr_v1.0_scaffold00020.85 0.9113951931151609 52 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00022.105 0.9111297205438457 53 AMTR_s00036p00235910 evm_27.TU.AmTr_v1.0_scaffold00036.181 0.9110992560624732 54 AMTR_s00029p00208280 Cell wall.sporopollenin.exine wall formation.DEX1 exine patterning factor evm_27.TU.AmTr_v1.0_scaffold00029.300 0.9110874518938429 55 AMTR_s00012p00252410 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component evm_27.TU.AmTr_v1.0_scaffold00012.260 0.910733691143749 57 AMTR_s00061p00186110 evm_27.TU.AmTr_v1.0_scaffold00061.211 0.9100480264650825 59 AMTR_s00029p00238480 evm_27.TU.AmTr_v1.0_scaffold00029.400 0.9098715901468396 60 AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component evm_27.TU.AmTr_v1.0_scaffold00061.110 0.9095767731742316 61 AMTR_s00007p00205840 Multi-process regulation.TOR signalling pathway.TORC complex.RAPTOR regulatory component evm_27.TU.AmTr_v1.0_scaffold00007.183 0.9092025067926833 63 AMTR_s00119p00021560 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00119.5 0.9086667587243044 64 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9084084526885169 88 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.908263277311623 66 AMTR_s00107p00047780 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00107.18 0.9081798013931842 67 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9076919501937077 68 AMTR_s00058p00176500 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT3 gamma subunit evm_27.TU.AmTr_v1.0_scaffold00058.166 0.9075680175880684 69 AMTR_s00007p00148280 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC1 component evm_27.TU.AmTr_v1.0_scaffold00007.111 0.9072302149654004 70 AMTR_s00004p00261460 Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.256 0.9070087165120938 71 AMTR_s00027p00245240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).SNU114/U5-116kDa snRNP component evm_27.TU.AmTr_v1.0_scaffold00027.151 0.9055314083744338 72 AMTR_s00183p00020680 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.bifunctional 5-aminoimidazole-4-carboxamide RN transformylase and IMP cyclohydrolase evm_27.TU.AmTr_v1.0_scaffold00183.5 0.9053107297731275 74 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.9049330175809619 75 AMTR_s00068p00130970 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00068.89 0.9044803012553578 77 AMTR_s00099p00129340 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).CAND1 adaptor protein exchange factor evm_27.TU.AmTr_v1.0_scaffold00099.115 0.9040147155848964 78 AMTR_s00025p00214350 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.288 0.9039131056941009 79 AMTR_s00062p00040090 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DAWDLE pri-miRNA-DCL1 association factor evm_27.TU.AmTr_v1.0_scaffold00062.21 0.9034787004524247 80 AMTR_s00033p00116200 KH domain-containing protein HEN4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.57 0.9030292138610502 81 AMTR_s00062p00159540 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.149 0.9025596203159938 82 AMTR_s00039p00212570 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component evm_27.TU.AmTr_v1.0_scaffold00039.183 0.9021618144329875 83 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9017639750916299 86 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase 0.901743232949227 86 AMTR_s00059p00074580 evm_27.TU.AmTr_v1.0_scaffold00059.49 0.9017278187155207 87 AMTR_s00040p00226100 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00040.267 0.9011906770817449 88 AMTR_s00019p00231450 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN5 component evm_27.TU.AmTr_v1.0_scaffold00019.317 0.9009334234536949 89 AMTR_s00006p00256440 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-gamma component evm_27.TU.AmTr_v1.0_scaffold00006.192 0.9007715935987136 90 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9001531555826809 99 AMTR_s00104p00136740 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.66 0.9001310071619643 92 AMTR_s00121p00103870 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00121.21 0.899935441390184 93 AMTR_s00047p00208850 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component evm_27.TU.AmTr_v1.0_scaffold00047.148 0.8995657480089221 95 AMTR_s00025p00204100 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00025.262 0.899405305354189 96 AMTR_s00049p00219600 evm_27.TU.AmTr_v1.0_scaffold00049.255 0.8993633138292554 97 AMTR_s00109p00056900 La protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.42 0.8992620229047821 98 AMTR_s00077p00187600 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VII kinase families.RLCK-VIIa kinase evm_27.TU.AmTr_v1.0_scaffold00077.219 0.8989619307307354 99 AMTR_s00007p00259060 Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.316 0.8989522250564145 100