Sequence Description Alias PCC hrr AMTR_s00023p00015970 RNA biosynthesis.transcriptional activation.FAR1 transcription factor evm_27.TU.AmTr_v1.0_scaffold00023.4 0.9320048936630025 2 AMTR_s00089p00089760 evm_27.TU.AmTr_v1.0_scaffold00089.47 0.911241466355286 3 AMTR_s00029p00096200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component evm_27.TU.AmTr_v1.0_scaffold00029.89 0.9109260981284008 4 AMTR_s00029p00219930 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.336 0.9104149065465055 4 AMTR_s00069p00127620 evm_27.TU.AmTr_v1.0_scaffold00069.88 0.9078129451547529 5 AMTR_s00012p00035940 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.ALY/Tho4 mRNA-binding adaptor component evm_27.TU.AmTr_v1.0_scaffold00012.6 0.9008177994697522 6 AMTR_s00066p00134410 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.129 0.8976716679945613 7 AMTR_s00069p00173060 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.150 0.8935041116442286 8 AMTR_s00032p00053220 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein evm_27.TU.AmTr_v1.0_scaffold00032.33 0.8932863111522547 9 AMTR_s00163p00018060 Coenzyme metabolism.molybdenum cofactor synthesis.molybdenum ion insertion.bifunctional molybdopterin adenylyltransferase and molybdenumtransferase (CNX1) evm_27.TU.AmTr_v1.0_scaffold00163.5 0.8892589085592221 12 AMTR_s00025p00204100 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00025.262 0.8888751432350567 46 AMTR_s00038p00121420 Phytohormones.abscisic acid.perception and signalling.signal transducer (KEG) evm_27.TU.AmTr_v1.0_scaffold00038.67 0.8859311584933183 26 AMTR_s00022p00096260 UPF0496 protein At3g19330 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.76 0.8851590256793701 13 AMTR_s00060p00187100 F-box protein SKIP28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00060.123 0.8849961355315276 14 AMTR_s00026p00162850 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor evm_27.TU.AmTr_v1.0_scaffold00026.80 0.8830859281520487 15 AMTR_s00001p00269200 RNA processing.RNA modification.uridylation.URT1 uridylyltransferase evm_27.TU.AmTr_v1.0_scaffold00001.433 0.8798171792784603 16 AMTR_s00025p00215680 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00025.292 0.8785372476736738 17 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein evm_27.TU.AmTr_v1.0_scaffold00003.45 0.878437391612131 18 AMTR_s00072p00117380 Cell division control protein 48 homolog D OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.59 0.8765364314358531 27 AMTR_s00099p00081960 Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.60 0.8765318578030866 20 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component evm_27.TU.AmTr_v1.0_scaffold00009.205 0.8754956864442974 24 AMTR_s00092p00116010 KH domain-containing protein At4g18375 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.77 0.871636543774948 80 AMTR_s00226p00023090 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED4 component evm_27.TU.AmTr_v1.0_scaffold00226.12 0.8710585716051891 23 AMTR_s00048p00020720 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC10 component evm_27.TU.AmTr_v1.0_scaffold00048.3 0.8704628697678435 46 AMTR_s00071p00188270 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF3 component evm_27.TU.AmTr_v1.0_scaffold00071.198 0.8703308501246179 35 AMTR_s00004p00073360 evm_27.TU.AmTr_v1.0_scaffold00004.54 0.8695196587977498 26 AMTR_s00001p00152770 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00001.137 0.869143753327196 31 AMTR_s00062p00209350 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00062.228 0.8686668558592757 28 AMTR_s00061p00165040 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF6/PRP1/STA1 protein component evm_27.TU.AmTr_v1.0_scaffold00061.166 0.8677776044397814 29 AMTR_s00045p00122510 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease evm_27.TU.AmTr_v1.0_scaffold00045.119 0.8677225024639265 30 AMTR_s00015p00209030 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00015.56 0.8674562124798916 31 AMTR_s00133p00101570 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.46 0.8665706317118477 37 AMTR_s00040p00171130 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component evm_27.TU.AmTr_v1.0_scaffold00040.153 0.8656223848117651 33 AMTR_s00053p00219090 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO chain-forming-ligase E4 enzyme (PIAL) evm_27.TU.AmTr_v1.0_scaffold00053.172 0.8654666294015727 87 AMTR_s00012p00251030 Pumilio homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.251 0.8651256160717367 72 AMTR_s00057p00189360 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.205 0.8648094732301673 89 AMTR_s00001p00262160 External stimuli response.biotic stress.systemic acquired resistance (SAR).pipecolic acid biosynthesis.SARD4 cyclodeaminase evm_27.TU.AmTr_v1.0_scaffold00001.383 0.8620717990465463 37 AMTR_s00065p00140150 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor evm_27.TU.AmTr_v1.0_scaffold00065.96 0.8609203669454784 81 AMTR_s00154p00086540 Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00154.56 0.8598265670031832 42 AMTR_s00067p00056670 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.CDC5/MAC1 component evm_27.TU.AmTr_v1.0_scaffold00067.33 0.8597357022925263 40 AMTR_s00065p00139210 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00065.95 0.8594799545113478 41 AMTR_s00051p00079490 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor evm_27.TU.AmTr_v1.0_scaffold00051.29 0.8582796656181721 57 AMTR_s00247p00011460 Protein biosynthesis.translation initiation.eIF5B Met-tRNA positioning factor evm_27.TU.AmTr_v1.0_scaffold00247.2 0.8575616215515806 43 AMTR_s00059p00192290 Protein modification.phosphorylation.TKL kinase superfamily.WAK/WAKL kinase evm_27.TU.AmTr_v1.0_scaffold00059.212 0.8572090684145796 44 AMTR_s00004p00270830 RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YC component evm_27.TU.AmTr_v1.0_scaffold00004.302 0.8571798306377493 45 AMTR_s00006p00265000 Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.271 0.8571187230156372 46 AMTR_s00056p00074670 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP35 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00056.54 0.8568947616934621 47 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8566959977157903 48 AMTR_s00024p00180690 Splicing factor-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.141 0.8561763268600819 92 AMTR_s00019p00152360 Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type) evm_27.TU.AmTr_v1.0_scaffold00019.141 0.85507377387983 85 AMTR_s00013p00226690 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.carbamoyl phosphate synthetase dimer.large subunit evm_27.TU.AmTr_v1.0_scaffold00013.174 0.8532003030444161 52 AMTR_s00059p00213590 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpT plant-specific stabilizing component evm_27.TU.AmTr_v1.0_scaffold00059.250 0.851190657499441 53 AMTR_s00059p00117370 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B4 component evm_27.TU.AmTr_v1.0_scaffold00059.91 0.8503593177125714 54 AMTR_s00088p00141580 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type evm_27.TU.AmTr_v1.0_scaffold00088.108 0.8502121449802983 56 AMTR_s00078p00186900 FRIGIDA-like protein 4a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00078.192 0.8494439909166314 57 AMTR_s00045p00058890 evm_27.TU.AmTr_v1.0_scaffold00045.42 0.8488458715274516 58 AMTR_s00028p00246730 Protein modification.phosphorylation.TKL kinase superfamily.LRR-X kinase families.LRR-Xa kinase evm_27.TU.AmTr_v1.0_scaffold00028.142 0.848148616087767 59 AMTR_s00004p00210450 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).succinate formation.NAD-dependent succinic semialdehyde dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00004.212 0.8480363281971817 60 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00045.285 0.8478684824101569 72 AMTR_s00010p00267890 Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase evm_27.TU.AmTr_v1.0_scaffold00010.545 0.847659355531054 62 AMTR_s00049p00211440 Vesicle trafficking.autophagosome formation.cargo recruitment.NBR1 autophagic adapter protein evm_27.TU.AmTr_v1.0_scaffold00049.238 0.8470313301340168 63 AMTR_s00004p00150000 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.Efl1 elongation-factor-like regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00004.154 0.8449815052615702 65 AMTR_s00002p00269760 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.558 0.8447812376521225 97 AMTR_s00087p00057840 evm_27.TU.AmTr_v1.0_scaffold00087.12 0.8443520645774532 80 AMTR_s00006p00265300 RNA biosynthesis.transcriptional activation.Trihelix transcription factor evm_27.TU.AmTr_v1.0_scaffold00006.275 0.8442371563263372 68 AMTR_s00004p00270220 evm_27.TU.AmTr_v1.0_scaffold00004.293 0.8435597453403948 69 AMTR_s00101p00033020 UBP1-associated protein 2A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.8 0.8429166550612506 70 AMTR_s00007p00251190 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR6 evm_27.TU.AmTr_v1.0_scaffold00007.284 0.8427129563981386 86 AMTR_s00066p00165410 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00066.180 0.8421650685335885 72 AMTR_s00038p00110060 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A1 activities.PC-PLA1-type phospholipase A1 evm_27.TU.AmTr_v1.0_scaffold00038.54 0.841905399070143 73 AMTR_s00001p00261430 Multi-process regulation.circadian clock.evening element regulation.REVEILLE clock factor evm_27.TU.AmTr_v1.0_scaffold00001.380 0.8418531021333664 74 AMTR_s00009p00235710 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IX kinase families.RLCK-IXb kinase evm_27.TU.AmTr_v1.0_scaffold00009.195 0.8416144941112208 75 AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.840995862505232 76 AMTR_s00002p00206060 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3d component evm_27.TU.AmTr_v1.0_scaffold00002.205 0.8408277734997407 77 AMTR_s00022p00176740 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00022.187 0.840691770239663 78 AMTR_s00001p00273090 Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.593 0.8403447898884784 79 AMTR_s00065p00122030 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.72 0.8402889394668718 80 AMTR_s00017p00253050 Protein modification.phosphorylation.TKL kinase superfamily.RKF3 kinase evm_27.TU.AmTr_v1.0_scaffold00017.262 0.8400284867526372 81 AMTR_s00125p00118080 Solute transport.carrier-mediated transport.APC superfamily.HAK/KUP/KT potassium cation transporter evm_27.TU.AmTr_v1.0_scaffold00125.31 0.8395783344394769 87 AMTR_s00009p00268850 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase evm_27.TU.AmTr_v1.0_scaffold00009.433 0.8387895532213864 84 AMTR_s00017p00035550 RNA biosynthesis.transcriptional activation.TCP transcription factor evm_27.TU.AmTr_v1.0_scaffold00017.13 0.8380795399686959 87 AMTR_s00059p00215360 RNA biosynthesis.RNA polymerase II-dependent transcription.phosphorylation/dephosphorylation.polymerase-II kinase complex (CTDK-I).cyclin-type regulator component evm_27.TU.AmTr_v1.0_scaffold00059.255 0.8363709993428682 88 AMTR_s00077p00052030 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase 0.835207897294233 90 AMTR_s00092p00134420 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase evm_27.TU.AmTr_v1.0_scaffold00092.100 0.8340922934256394 92 AMTR_s00021p00254700 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.Tim17 component evm_27.TU.AmTr_v1.0_scaffold00021.299 0.8332426021906999 95 AMTR_s00046p00170580 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein evm_27.TU.AmTr_v1.0_scaffold00046.93 0.8329549964208849 96 AMTR_s00049p00063500 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component evm_27.TU.AmTr_v1.0_scaffold00049.40 0.8321901510632974 98 AMTR_s00157p00080130 Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00157.43 0.831812920310202 100