Sequence Description Alias PCC hrr AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9592222301110839 1 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9414326877128224 8 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9389693126310241 9 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9382841447311657 13 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9361499871216682 14 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9353903734058007 11 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9344727014823229 22 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9326696360400619 21 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9326225146171666 17 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component evm_27.TU.AmTr_v1.0_scaffold00013.7 0.9317495381085711 10 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.9316578129613913 11 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9309873459090935 16 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00002.494 0.9301864146234795 13 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein evm_27.TU.AmTr_v1.0_scaffold00039.114 0.9287201735445493 14 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9277370785004654 15 AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00009.218 0.9273065262683171 16 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.925383783816341 20 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.9240683091568109 18 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.9238921679865539 19 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9233738549531036 20 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9233644452591673 21 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00003.202 0.9230661328679705 22 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.9211719358090091 23 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.9203610677514654 24 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease evm_27.TU.AmTr_v1.0_scaffold00006.223 0.9195321630493811 25 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9184464522401824 26 AMTR_s00013p00241300 evm_27.TU.AmTr_v1.0_scaffold00013.201 0.9177805033868467 27 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein evm_27.TU.AmTr_v1.0_scaffold00015.112 0.9175615951116657 28 AMTR_s00024p00252900 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor evm_27.TU.AmTr_v1.0_scaffold00024.352 0.916858189547065 29 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component evm_27.TU.AmTr_v1.0_scaffold00095.88 0.9164722886038538 30 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor evm_27.TU.AmTr_v1.0_scaffold00109.135 0.9156441074994763 31 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.914857498872468 32 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9131361347648326 33 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9127645875234187 34 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.9126425798862818 35 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9124007318638735 57 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9122932596722063 39 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00176.30 0.9108338396628436 38 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9099955695680558 39 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9098722493608339 40 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9096681293810238 41 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.9092211495362529 42 AMTR_s00099p00074160 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.55 0.9073928916903067 43 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.906700511902417 48 AMTR_s00100p00087410 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00100.26 0.9060334385384581 45 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9059859041964001 46 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9051263228266546 49 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.904775385548644 65 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.6 0.9033180458656316 49 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.903203553458906 50 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.902876672109273 55 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.9026212454768101 52 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.9025953099089402 53 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9015497420373454 54 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.9015060488030389 55 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.9012982216344441 56 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.8996495786586693 71 AMTR_s00092p00096920 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor evm_27.TU.AmTr_v1.0_scaffold00092.54 0.8992702648426041 58 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component evm_27.TU.AmTr_v1.0_scaffold00016.38 0.8984094344093772 60 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.8983188548339974 61 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8982182675501394 62 AMTR_s00071p00185160 evm_27.TU.AmTr_v1.0_scaffold00071.193 0.894365424345614 63 AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.182 0.894293837735912 64 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.8942693538738076 65 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.8940524032252029 78 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8927615075129985 67 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8920985132569615 68 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8915300104677365 69 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.8905620113167012 71 AMTR_s00025p00231300 evm_27.TU.AmTr_v1.0_scaffold00025.336 0.8899682496508237 72 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8899318939377227 73 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.8894697228897226 74 AMTR_s00065p00020910 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.6 0.8877164931731096 75 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8873527722481973 76 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8866912726349299 77 AMTR_s00175p00056960 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter evm_27.TU.AmTr_v1.0_scaffold00175.29 0.886074040419007 78 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8860143717811522 79 AMTR_s00065p00129700 Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase evm_27.TU.AmTr_v1.0_scaffold00065.84 0.8858855499310668 80 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8852799500082849 91 AMTR_s00049p00149530 Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.131 0.8851587847327518 82 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8849330593483451 83 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component evm_27.TU.AmTr_v1.0_scaffold00065.208 0.884455672325695 86 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8839681702470886 87 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8836506174597007 88 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8830723728006593 90 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.8830371540380343 91 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8823926200418457 92 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.8817487919129378 93 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.8789812365264528 95 AMTR_s00142p00033030 MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00142.14 0.8781340996675425 96 AMTR_s00048p00192820 evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8779166330242475 97 AMTR_s00149p00067630 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.44 0.8773782183832717 98 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8772370724427843 99 AMTR_s00019p00211360 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component evm_27.TU.AmTr_v1.0_scaffold00019.256 0.8768887452755939 100