Sequence Description Alias PCC hrr AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.9473547844707491 2 AMTR_s00111p00017920 evm_27.TU.AmTr_v1.0_scaffold00111.3 0.932136289068396 2 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.9263863998591282 7 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.9258369617020469 5 AMTR_s00161p00056860 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00161.22 0.9249081659369485 5 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9224930099467205 15 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.9220557150873223 7 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.9198064538252598 8 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9195092645794313 11 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9194550408319845 10 AMTR_s00071p00125410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00071.102 0.9194045336650366 11 AMTR_s00029p00166470 Cellular respiration.glycolysis.methylglyoxal degradation.GLY-III glutathione-independent glyoxalase evm_27.TU.AmTr_v1.0_scaffold00029.215 0.9192891060183044 12 AMTR_s00012p00252410 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component evm_27.TU.AmTr_v1.0_scaffold00012.260 0.9145044452970315 13 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00062.184 0.9124623648543898 14 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.9118763345443935 15 AMTR_s00025p00127670 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00025.120 0.9104348169950229 27 AMTR_s00057p00185220 Probable serine/threonine-protein phosphatase 2A regulatory subunit B subunit TON2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.200 0.9101169612189811 52 AMTR_s00070p00097310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase evm_27.TU.AmTr_v1.0_scaffold00070.48 0.9096328074757336 46 AMTR_s00029p00131600 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor complex.large subunit evm_27.TU.AmTr_v1.0_scaffold00029.149 0.9091308647600542 20 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.9089411913176523 20 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.9058858909052897 24 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.9038127694401783 28 AMTR_s00007p00268660 evm_27.TU.AmTr_v1.0_scaffold00007.394 0.9018689584741282 23 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit evm_27.TU.AmTr_v1.0_scaffold00039.46 0.901532055521151 49 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9006352597988887 78 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9003387153350597 36 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8999420037152446 28 AMTR_s00159p00062070 RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor evm_27.TU.AmTr_v1.0_scaffold00159.24 0.8995601210286198 96 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase evm_27.TU.AmTr_v1.0_scaffold00131.42 0.8978441942299508 90 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8967526509772589 75 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.8957319556642644 32 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8947043712628461 35 AMTR_s00088p00077590 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00088.47 0.8939802582111971 34 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.8938517605754067 92 AMTR_s00027p00246570 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.154 0.8935907827836226 85 AMTR_s00078p00190750 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.Hsp110 protein evm_27.TU.AmTr_v1.0_scaffold00078.198 0.8917695842705147 38 AMTR_s00160p00065370 SH3 domain-containing protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00160.21 0.8916341317774172 39 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.8916034451354306 52 AMTR_s00171p00041870 evm_27.TU.AmTr_v1.0_scaffold00171.18 0.8914840890719005 41 AMTR_s00024p00200150 YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.175 0.8913804877860111 42 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.8901787806911244 43 AMTR_s00111p00106690 Cellular respiration.glycolysis.cytosolic glycolysis.phosphofructokinase activities.ATP-dependent phosphofructokinase evm_27.TU.AmTr_v1.0_scaffold00111.80 0.8896911892545625 82 AMTR_s00106p00129110 evm_27.TU.AmTr_v1.0_scaffold00106.98 0.8887398880870382 45 AMTR_s00002p00270350 Solute transport.carrier-mediated transport.MFS superfamily.NTT ATP:ADP antiporter evm_27.TU.AmTr_v1.0_scaffold00002.579 0.888371018548816 46 AMTR_s00055p00209070 RNA biosynthesis.transcriptional activation.Trihelix transcription factor evm_27.TU.AmTr_v1.0_scaffold00055.148 0.8878979428251053 48 AMTR_s00033p00075910 evm_27.TU.AmTr_v1.0_scaffold00033.33 0.8878019206937734 49 AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00090.59 0.8874466614696224 50 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.43 0.8849780799154904 57 AMTR_s00119p00070790 Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group evm_27.TU.AmTr_v1.0_scaffold00119.52 0.8838155762463904 60 AMTR_s00003p00081550 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00003.47 0.8837827969948339 61 AMTR_s00028p00187760 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00028.80 0.8836339798444116 62 AMTR_s00041p00057360 evm_27.TU.AmTr_v1.0_scaffold00041.29 0.883513630497785 63 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.8825274098615592 66 AMTR_s00002p00146270 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.110 0.8817253270284369 68 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.8810289803519986 91 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.8809784149814067 72 AMTR_s00037p00206460 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00037.106 0.8805804643151324 74 AMTR_s00099p00099340 evm_27.TU.AmTr_v1.0_scaffold00099.79 0.8804624664204888 76 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8803688083279873 77 AMTR_s00269p00014640 Protein modification.protein folding and quality control.protein folding catalyst activities.Parvulin peptidyl-prolyl isomerase evm_27.TU.AmTr_v1.0_scaffold00269.5 0.8802999803977061 78 AMTR_s00092p00127820 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00092.91 0.8798347521448021 81 AMTR_s00049p00163880 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.150 0.8796601004874072 82 AMTR_s00006p00246940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00006.134 0.8784861336100049 85 AMTR_s00078p00065640 evm_27.TU.AmTr_v1.0_scaffold00078.39 0.8784036121886541 86 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8783398303765753 87 AMTR_s00088p00159600 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00088.130 0.8772893533168624 90 AMTR_s00088p00139250 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00088.107 0.877085144984049 91 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.8768851710584886 92 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8763178049104694 93 AMTR_s00011p00243170 Transcription factor GTE6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.139 0.8754044879914669 96 AMTR_s00067p00123530 evm_27.TU.AmTr_v1.0_scaffold00067.102 0.8750438512249379 97 AMTR_s00039p00073030 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.hydroxylase (COQ6) evm_27.TU.AmTr_v1.0_scaffold00039.33 0.8748132800387846 99