Sequence Description Alias PCC hrr AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9476569983109926 3 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.9395136822672026 2 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.937383486870975 3 AMTR_s00045p00217350 evm_27.TU.AmTr_v1.0_scaffold00045.306 0.935845922330566 5 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9332139940458828 9 AMTR_s00131p00054800 evm_27.TU.AmTr_v1.0_scaffold00131.33 0.932423817920245 6 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9322073443977095 12 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9306085189652058 14 AMTR_s00022p00251260 RNA processing.organelle machineries.RNA modification.tRNA thiolation.MnmA pathway.tRNA thiouridylase evm_27.TU.AmTr_v1.0_scaffold00022.388 0.9286745321312069 21 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.9266191031481933 10 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9253576492033472 32 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.9249194777927052 12 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9243612946805542 13 AMTR_s00081p00136350 Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase evm_27.TU.AmTr_v1.0_scaffold00081.52 0.9226506447993934 14 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.160 0.9223730640310455 15 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9223394405276556 33 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9217642580958253 17 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.9216062820748927 18 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.9212225459116714 19 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.920812282116526 39 AMTR_s00072p00102490 evm_27.TU.AmTr_v1.0_scaffold00072.49 0.9202201994000655 21 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.9170937363456969 22 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9168336856419369 23 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9167800476713118 34 AMTR_s00021p00166450 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.120 0.9166272316124157 97 AMTR_s00033p00083200 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XI kinase evm_27.TU.AmTr_v1.0_scaffold00033.36 0.9166171976811605 26 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9163266686899177 27 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9155501053428492 28 AMTR_s00023p00012750 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metal-citrate complex transporter (FRD-type) evm_27.TU.AmTr_v1.0_scaffold00023.3 0.9154552374189201 29 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9149719669696048 30 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9140423979929982 87 AMTR_s00001p00269990 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT3 protease evm_27.TU.AmTr_v1.0_scaffold00001.453 0.9138740102642159 32 AMTR_s00009p00264940 Choline transporter protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.378 0.9135456910478711 33 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9133293476128442 38 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9124109989002214 36 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9120779125728421 37 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9119420554875454 39 AMTR_s00062p00145630 CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00062.132 0.9099422819007963 40 AMTR_s00111p00138070 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00111.118 0.9090179996357818 89 AMTR_s00010p00206450 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase evm_27.TU.AmTr_v1.0_scaffold00010.198 0.9083582855369721 44 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00075.28 0.908111064126295 45 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase evm_27.TU.AmTr_v1.0_scaffold00001.55 0.9074091929721444 46 AMTR_s00066p00141740 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.acetolactate synthase complex.regulatory subunit evm_27.TU.AmTr_v1.0_scaffold00066.141 0.9069397165358408 47 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9067763298713003 48 AMTR_s00007p00031450 evm_27.TU.AmTr_v1.0_scaffold00007.11 0.9067688579042718 49 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.9065012059532732 50 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9064392071244988 51 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9051444787167141 52 AMTR_s00067p00113950 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component evm_27.TU.AmTr_v1.0_scaffold00067.91 0.9049258255575383 53 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9048784389616935 54 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.904505821530941 55 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase evm_27.TU.AmTr_v1.0_scaffold00053.107 0.9039572483709345 58 AMTR_s00092p00119050 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00092.82 0.9038818391827621 59 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9033819360148517 60 AMTR_s00006p00266490 Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.289 0.9031345194239537 100 AMTR_s00089p00029710 Sialyltransferase-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00089.8 0.9028261753051386 62 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.9017450226697619 63 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.9007150292612437 65 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.8983498032708632 68 AMTR_s00008p00195760 evm_27.TU.AmTr_v1.0_scaffold00008.113 0.8973996346855987 71 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.897217753462463 72 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8970277382240676 73 AMTR_s00015p00199070 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase evm_27.TU.AmTr_v1.0_scaffold00015.53 0.8967823097819997 74 AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.8962353582948053 75 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8954503816049817 76 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.8951035844971948 78 AMTR_s00154p00076410 Cell division control protein 48 homolog B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00154.50 0.8941955548508455 80 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8930405964334103 81 AMTR_s00002p00198580 Uncharacterized protein At4g17910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.186 0.892423732804813 84 AMTR_s00033p00195130 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.156 0.8923423964978833 85 AMTR_s00008p00241920 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8921763890345074 86 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.8916327885021083 87 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.8911632637246704 88 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.890249071717338 89 AMTR_s00067p00074620 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO4 transport karyopherin evm_27.TU.AmTr_v1.0_scaffold00067.50 0.8892952846696983 90 AMTR_s00106p00104330 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00106.74 0.8889679436776325 91 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8885640582094306 93 AMTR_s00038p00036580 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00038.14 0.888283923077236 94 AMTR_s00106p00043170 Leucine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.22 0.8881142729541711 95 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.88785740340695 96 AMTR_s00022p00127120 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.118 0.8877952451113675 98 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00069.157 0.887575336297252 99