Sequence Description Alias PCC hrr AT1G14150 PsbQ-like 2 PQL1, PQL2 0.9242713180369782 2 AT1G70760 inorganic carbon transport protein-related CRR23 0.9011401989331075 3 AT3G54050 high cyclic electron flow 1 HCEF1 0.8991076871471896 20 AT1G11860 Glycine cleavage T-protein family 0.8983273685136008 11 AT2G39470 PsbP-like protein 2 PPL2 0.8954318501722945 15 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.8888303812946202 25 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.8880198729653875 27 AT1G09340 chloroplast RNA binding CRB, HIP1.3, CSP41B 0.8878975242956925 26 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.8852620047841492 30 AT1G16880 uridylyltransferase-related 0.8829903770054787 10 AT3G16250 NDH-dependent cyclic electron flow 1 NDF4 0.8802875314607129 11 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein EDA3 0.8783157250124304 12 AT3G55330 PsbP-like protein 1 PPL1 0.8771523448600345 18 AT2G35370 glycine decarboxylase complex H GDCH 0.8754329471592993 15 AT1G32470 Single hybrid motif superfamily protein 0.8752997434545158 17 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8739424081970141 16 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.8726513856313869 33 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.8716585510088006 37 AT1G54500 Rubredoxin-like superfamily protein 0.8715881427637254 19 AT1G50320 thioredoxin X THX, ATHX, ATX 0.8648214081828673 20 AT1G65230 Uncharacterized conserved protein (DUF2358) 0.8641001713379054 21 AT5G38420 Ribulose bisphosphate carboxylase (small chain) family protein 0.8628461319387002 22 AT4G10300 RmlC-like cupins superfamily protein 0.8617919253751349 23 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.8615934661476652 35 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.8596948826829507 25 AT1G15980 NDH-dependent cyclic electron flow 1 NDH48, NDF1 0.8587320222974181 46 AT4G39710 FK506-binding protein 16-2 FKBP16-2 0.8584211674861457 27 AT3G47070 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8573448210056092 28 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, LHCA6 0.8552849809950039 37 AT1G27480 alpha/beta-Hydrolases superfamily protein 0.853678392012313 30 AT4G02530 chloroplast thylakoid lumen protein 0.8535534818889738 47 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8532555413977415 39 AT5G07020 proline-rich family protein 0.8527947688145461 39 AT1G03680 thioredoxin M-type 1 ATHM1, THM1, TRX-M1, ATM1 0.8524022773655959 34 AT1G32080 membrane protein, putative 0.8520051443545983 35 AT1G64770 NDH-dependent cyclic electron flow 1 NDH45, NDF2 0.8493714929420642 36 AT3G44020 thylakoid lumenal P17.1 protein 0.846137917324647 37 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8455731623595479 38 AT3G63140 chloroplast stem-loop binding protein of 41 kDa CSP41A 0.8425652674996364 48 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.8424228696849684 68 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8411333615736016 41 AT3G01500 carbonic anhydrase 1 CA1, ATBCA1, SABP3, ATSABP3 0.8410259943409116 42 AT1G18730 NDH dependent flow 6 NDF6 0.8408173691464689 43 AT2G48070 resistance to phytophthora 1 RPH1 0.8407791053543607 44 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8401515325478663 54 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.8401515325478663 54 AT1G04640 lipoyltransferase 2 LIP2 0.8383135497610721 47 AT2G21530 SMAD/FHA domain-containing protein 0.8375406445329434 48 AT1G32060 phosphoribulokinase PRK 0.8373466671790789 49 AT1G74730 Protein of unknown function (DUF1118) 0.8366835244343711 71 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.8364690610443564 51 AT5G45680 FK506-binding protein 13 ATFKBP13, FKBP13 0.8362515513054767 52 AT3G01440 PsbQ-like 1 PQL1, PQL2 0.8361279639444337 53 AT4G03280 photosynthetic electron transfer C PGR1, PETC 0.8355218233950522 55 AT3G02730 thioredoxin F-type 1 ATF1, TRXF1 0.8354893038413708 55 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8343248151764079 56 AT4G37925 subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex NDH-M 0.8332933335959261 57 AT5G20935 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.833134249425776 58 AT1G44575 Chlorophyll A-B binding family protein NPQ4, PSBS 0.8327262030387008 59 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.831899321965874 60 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8316583406379091 61 AT1G43560 thioredoxin Y2 Aty2, ty2 0.828366892516178 66 AT4G12830 alpha/beta-Hydrolases superfamily protein 0.8279512629679651 63 AT5G62140 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 0.8276126775149142 64 AT2G17695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 0.8275426437250826 65 AT3G62410 CP12 domain-containing protein 2 CP12, CP12-2 0.8269785690991641 66 AT3G12780 phosphoglycerate kinase 1 PGK1 0.8268669913835581 74 AT1G20340 Cupredoxin superfamily protein DRT112, PETE2 0.8267267497331895 68 AT1G76450 Photosystem II reaction center PsbP family protein 0.8256831529532968 83 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 PMDH2 0.8250264566792912 70 AT3G26650 glyceraldehyde 3-phosphate dehydrogenase A subunit GAPA-1, GAPA 0.8244122557260251 71 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8238814992761182 88 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 0.8226540467923741 74 AT2G01590 chlororespiratory reduction 3 CRR3 0.8217845603704409 75 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GC1, SULA 0.8213899038802742 76 AT2G32480 ARABIDOPSIS SERIN PROTEASE ARASP 0.8209936303745525 77 AT1G67090 ribulose bisphosphate carboxylase small chain 1A RBCS1A 0.8206906739565305 78 AT5G38410 Ribulose bisphosphate carboxylase (small chain) family protein 0.8206015495020399 79 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8201074748768337 80 AT4G33010 glycine decarboxylase P-protein 1 AtGLDP1, GLDP1 0.8198687542288994 81 AT3G55630 DHFS-FPGS homolog D FPGS3, DFD, ATDFD 0.8198217323139481 82 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein 0.8196108368983562 83 AT3G46780 plastid transcriptionally active 16 PTAC16 0.8174330334737296 96 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.8172381858327393 85 AT3G15360 thioredoxin M-type 4 ATHM4, TRX-M4, ATM4 0.8161665230627925 86 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related protein 0.8145929072361111 87 AT4G34190 stress enhanced protein 1 SEP1 0.8142041952729431 88 AT1G73060 Low PSII Accumulation 3 LPA3 0.8140856750305541 89 AT5G35630 glutamine synthetase 2 GS2, ATGSL1, GLN2 0.8139486360810296 90 AT3G60750 Transketolase 0.8134556088600541 91 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8133579948760015 99 AT1G18170 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8126692384380455 93 AT5G16710 dehydroascorbate reductase 1 DHAR3 0.8123423183002609 95 AT5G23120 photosystem II stability/assembly factor, chloroplast (HCF136) HCF136 0.8121241168451092 96 AT1G03630 protochlorophyllide oxidoreductase C POR C, PORC 0.8099846264684748 97 AT3G26060 Thioredoxin superfamily protein ATPRX Q 0.8091378407117761 98 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.8085494486465687 99 AT4G21210 PPDK regulatory protein ATRP1, RP1 0.808291730820304 100