Sequence Description Alias PCC hrr AMTR_s00014p00034060 Cell wall.callose.callose synthase evm_27.TU.AmTr_v1.0_scaffold00014.10 0.9522414161643724 4 AMTR_s00104p00047630 Disease resistance protein RPS2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.12 0.9498689329163368 2 AMTR_s00025p00149970 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component evm_27.TU.AmTr_v1.0_scaffold00025.169 0.9495439491873439 3 AMTR_s00110p00073830 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00110.39 0.9478714453978846 4 AMTR_s00173p00060580 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00173.16 0.9478535872783459 5 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9458613462165242 6 AMTR_s00013p00056220 evm_27.TU.AmTr_v1.0_scaffold00013.19 0.9455126769397895 7 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9429745102718081 8 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component evm_27.TU.AmTr_v1.0_scaffold00138.19 0.942659091504175 9 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9399981311668713 12 AMTR_s00042p00115230 DNA damage response.DNA repair mechanisms.photoreactivation.6-4-type photolyase (UVR3) evm_27.TU.AmTr_v1.0_scaffold00042.26 0.9393944041098546 17 AMTR_s00029p00113670 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component evm_27.TU.AmTr_v1.0_scaffold00029.124 0.9388135304428544 17 AMTR_s00033p00224700 BEACH domain-containing protein B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.211 0.9385742947081567 24 AMTR_s00059p00208660 evm_27.TU.AmTr_v1.0_scaffold00059.241 0.9378880604149044 14 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9374122993400325 15 AMTR_s00060p00196600 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component evm_27.TU.AmTr_v1.0_scaffold00060.141 0.9366125844224208 18 AMTR_s00140p00082700 evm_27.TU.AmTr_v1.0_scaffold00140.38 0.9356053462844657 17 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9350793215007012 28 AMTR_s00025p00188660 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) evm_27.TU.AmTr_v1.0_scaffold00025.230 0.9346943098011736 26 AMTR_s00010p00125180 Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.82 0.9344453471876656 20 AMTR_s00020p00038010 Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00020.9 0.9340950319704271 60 AMTR_s00019p00219410 evm_27.TU.AmTr_v1.0_scaffold00019.273 0.9333871417784898 22 AMTR_s00017p00141460 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.DMI1/Pollux/Castor calcium cation channel evm_27.TU.AmTr_v1.0_scaffold00017.65 0.9329915273418021 23 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.932775138607985 92 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.9324529230980374 25 AMTR_s00086p00165640 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00086.104 0.9323263129651546 35 AMTR_s00012p00082490 RNA biosynthesis.RNA polymerase II-dependent transcription.ELONGATOR transcription elongation complex.ELP1 component evm_27.TU.AmTr_v1.0_scaffold00012.37 0.9318561389048498 27 AMTR_s00069p00066350 Protein unc-13 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.40 0.9317209816387161 37 AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.9315440824193549 60 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.9311382624877784 41 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9310917455677346 75 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9304527082640812 32 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9301970455096673 33 AMTR_s00110p00154620 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.130 0.9301452032529999 34 AMTR_s00017p00239150 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00017.210 0.9290678180653259 41 AMTR_s00077p00115750 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00077.105 0.9289839295662933 69 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9285984258702878 38 AMTR_s00142p00102260 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00142.67 0.9279036779434039 92 AMTR_s00027p00053690 DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.8 0.9273749582698648 40 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9268151460884699 41 AMTR_s00003p00241010 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.MAP-kinase phosphatase evm_27.TU.AmTr_v1.0_scaffold00003.257 0.9265784701351124 42 AMTR_s00138p00108220 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component evm_27.TU.AmTr_v1.0_scaffold00138.52 0.9265209955332484 43 AMTR_s00175p00051190 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00175.23 0.9261932142288117 44 AMTR_s00064p00033720 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.FANCM DNA translocase component evm_27.TU.AmTr_v1.0_scaffold00064.4 0.9256317752348173 46 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.9250456876617952 47 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9249163954788867 48 AMTR_s00050p00215890 evm_27.TU.AmTr_v1.0_scaffold00050.82 0.9245675205924437 49 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9239452541751908 50 AMTR_s00100p00112150 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS8 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00100.35 0.9232467023834148 51 AMTR_s00030p00037130 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-III complex-specific components.TRS85 component evm_27.TU.AmTr_v1.0_scaffold00030.12 0.9221473075615007 52 AMTR_s00046p00164820 Protein modification.acetylation.NatC-type N-terminal acetylase complex.NAA35 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00046.88 0.9218168596614028 53 AMTR_s00110p00146400 DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.121 0.9216372018798435 54 AMTR_s00039p00148640 Cell cycle.cytokinesis.preprophase microtubule organization.CLASP microtubule orientation regulator evm_27.TU.AmTr_v1.0_scaffold00039.100 0.9201049784229013 94 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.9200016330231453 90 AMTR_s00086p00094500 Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00086.48 0.9197387934863468 57 AMTR_s00020p00234520 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease evm_27.TU.AmTr_v1.0_scaffold00020.106 0.9194929459754865 58 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9193242961380254 97 AMTR_s00055p00156820 Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.75 0.9188588635691368 60 AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.918565221801993 61 AMTR_s00009p00261910 Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.342 0.9179070865976755 63 AMTR_s00022p00221290 Clustered mitochondria protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.278 0.9178369379447746 72 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.917528273322192 78 AMTR_s00002p00267140 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNL alpha-1,2 exomannosidase evm_27.TU.AmTr_v1.0_scaffold00002.520 0.9168274956116 72 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9168230393229491 67 AMTR_s00033p00240560 evm_27.TU.AmTr_v1.0_scaffold00033.258 0.9165396413929737 68 AMTR_s00029p00198530 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC3/TTN7 component evm_27.TU.AmTr_v1.0_scaffold00029.274 0.9164423761860877 69 AMTR_s00008p00117710 Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.49 0.9161825577071648 72 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel evm_27.TU.AmTr_v1.0_scaffold00044.128 0.9154632694014282 75 AMTR_s00074p00162130 Lipid metabolism.lipid A synthesis.LpxB lipid-A-disaccharide synthase evm_27.TU.AmTr_v1.0_scaffold00074.77 0.9154270771514771 76 AMTR_s00189p00041140 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIV-type starch synthase evm_27.TU.AmTr_v1.0_scaffold00189.6 0.915389937252606 77 AMTR_s00033p00208970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00033.183 0.9150375956577185 78 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9147136018305233 79 AMTR_s00010p00247870 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.340 0.9144909374298725 80 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.9134352890754784 81 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9133707115963382 82 AMTR_s00007p00267150 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP107 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00007.380 0.9131498176491535 91 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9121230153011775 85 AMTR_s00004p00128400 Phytohormones.abscisic acid.synthesis.abscisic aldehyde oxidase evm_27.TU.AmTr_v1.0_scaffold00004.118 0.9117451927211494 86 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9117406350619607 87 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase evm_27.TU.AmTr_v1.0_scaffold00029.309 0.911695637848061 88 AMTR_s00059p00138250 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG7 ATG8/12-activating E1 protein evm_27.TU.AmTr_v1.0_scaffold00059.120 0.9109255255578276 89 AMTR_s00047p00175730 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00047.99 0.9108332670512933 90 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9107140526082961 91 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9107098411282798 92 AMTR_s00092p00069380 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP5/TAC12 component evm_27.TU.AmTr_v1.0_scaffold00092.35 0.9106316797154533 96 AMTR_s00080p00141940 tRNA ligase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00080.64 0.9105427192438645 94 AMTR_s00013p00258230 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.RAD50 component evm_27.TU.AmTr_v1.0_scaffold00013.257 0.9102319883831516 95 AMTR_s00053p00190690 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00053.139 0.910197338806241 96 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond evm_27.TU.AmTr_v1.0_scaffold00061.230 0.9101689319701306 97 AMTR_s00153p00051720 evm_27.TU.AmTr_v1.0_scaffold00153.23 0.9101151731483034 98 AMTR_s00062p00040090 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DAWDLE pri-miRNA-DCL1 association factor evm_27.TU.AmTr_v1.0_scaffold00062.21 0.9099880061903168 99 AMTR_s00057p00185570 DNA damage response.DNA repair polymerase activities.DNA polymerase zeta complex.REV3 catalytic subunit evm_27.TU.AmTr_v1.0_scaffold00057.201 0.9099480082849246 100